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Author Details

Timothy B Sackton
Harvard University
2002
55
28
PMIDPaper TitleJournal TitlePublished Year
38069903A Fast, Reproducible, High-throughput Variant Calling Workflow for Population Genomics.Mol Biol Evol2024
36790097Sizing Up the Onychophoran Genome: Repeats, Introns, and Gene Family Expansion Contribute to Genome Gigantism in Epiperipatus broadwayi.Genome Biol Evol2023
37665177PhyloAcc-GT: A Bayesian Method for Inferring Patterns of Substitution Rate Shifts on Targeted Lineages Accounting for Gene Tree Discordance.Mol Biol Evol2023
37844245Convergence in hearing-related genes between echolocating birds and mammals.Proc Natl Acad Sci U S A2023
36952570Interpreting the pervasive observation of U-shaped Site Frequency Spectra.PLoS Genet2023
37279503Expanding on Our Knowledge of Ecdysozoan Genomes: A Contiguous Assembly of the Meiofaunal Priapulan Tubiluchus corallicola.Genome Biol Evol2023
34888647Genomic signature of sexual reproduction in the bdelloid rotifer Macrotrachella quadricornifera.Genetics2022
32180366Error, noise and bias in de novo transcriptome assemblies.Mol Ecol Resour2021
33485466Deeply Altered Genome Architecture in the Endoparasitic Flowering Plant Sapria himalayana Griff. (Rafflesiaceae).Curr Biol2021
33750380The genome of the stable fly, Stomoxys calcitrans, reveals potential mechanisms underlying reproduction, host interactions, and novel targets for pest control.BMC Biol2021
33833441Author Correction: Dense sampling of bird diversity increases power of comparative genomics.Nature2021
34325695Publisher Correction: The genome of the stable fly, Stomoxys calcitrans, reveals potential mechanisms underlying reproduction, host interactions, and novel targets for pest control.BMC Biol2021
34244416Early origin of sweet perception in the songbird radiation.Science2021
34255817HieRFIT: a hierarchical cell type classification tool for projections from complex single-cell atlas datasets.Bioinformatics2021
33165513Evaluating single-cell cluster stability using the Jaccard similarity index.Bioinformatics2021
32306895Short paired-end reads trump long single-end reads for expression analysis.BMC Bioinformatics2020
33177665Dense sampling of bird diversity increases power of comparative genomics.Nature2020
32800625Studying Natural Selection in the Era of Ubiquitous Genomes.Trends Genet2020
30620335Immune genes are hotspots of shared positive selection across birds and mammals.Elife2019
31720122Genomics of host-pathogen interactions: challenges and opportunities across ecological and spatiotemporal scales.PeerJ2019
31329234Evolutionary Dynamics of Sex Chromosomes of Paleognathous Birds.Genome Biol Evol2019
31154982Integrating natural history collections and comparative genomics to study the genetic architecture of convergent evolution.Philos Trans R Soc Lond B Biol Sci2019
31154976Convergent evolution in the genomics era: new insights and directions.Philos Trans R Soc Lond B Biol Sci2019
30948549Convergent regulatory evolution and loss of flight in paleognathous birds.Science2019
30851112Bayesian Detection of Convergent Rate Changes of Conserved Noncoding Elements on Phylogenetic Trees.Mol Biol Evol2019
31109663Comparative genomics and transcriptomics of host-pathogen interactions in insects: evolutionary insights and future directions.Curr Opin Insect Sci2019
31135914Whole-Genome Analyses Resolve the Phylogeny of Flightless Birds (Palaeognathae) in the Presence of an Empirical Anomaly Zone.Syst Biol2019
28815912Assembly and RNA-free annotation of highly heterozygous genomes: The case of the thick-billed murre (Uria lomvia).Mol Ecol Resour2018
28911174Sex Reversal and Comparative Data Undermine the W Chromosome and Support Z-linked DMRT1 as the Regulator of Gonadal Sex Differentiation in Birds.Endocrinology2017
28087775Rapid Expansion of Immune-Related Gene Families in the House Fly, Musca domestica.Mol Biol Evol2017
28809012Comparative Genomics as a Foundation for Evo-Devo Studies in Birds.Methods Mol Biol2017
27419868Genotypic Context and Epistasis in Individuals and Populations.Cell2016
27561358OGS2: genome re-annotation of the jewel wasp Nasonia vitripennis.BMC Genomics2016
25859758Natural selection constrains neutral diversity across a wide range of species.PLoS Biol2015
24826901Positive selection drives faster-Z evolution in silkmoths.Evolution2014
25315136Genome of the house fly, Musca domestica L., a global vector of diseases with adaptations to a septic environment.Genome Biol2014
25158796Drosophila suzukii: the genetic footprint of a recent, worldwide invasion.Mol Biol Evol2014
25156254Synergistic blockade of mitotic exit by two chemical inhibitors of the APC/C.Nature2014
23315381Meta-analysis reveals that genes regulated by the Y chromosome in Drosophila melanogaster are preferentially localized to repressive chromatin.Genome Biol Evol2013
24386321Characterizing the infection-induced transcriptome of Nasonia vitripennis reveals a preponderance of taxonomically-restricted immune genes.PLoS One2013
22665801Y chromosome mediates ribosomal DNA silencing and modulates the chromatin state in Drosophila.Proc Natl Acad Sci U S A2012
22813779Genes involved in the evolution of herbivory by a leaf-mining, Drosophilid fly.Genome Biol Evol2012
21969588Interspecific Y chromosome introgressions disrupt testis-specific gene expression and male reproductive phenotypes in Drosophila.Proc Natl Acad Sci U S A2011
20075255Functional and evolutionary insights from the genomes of three parasitoid Nasonia species.Science2010
20066029Genotype and gene expression associations with immune function in Drosophila.PLoS Genet2010
19500410Comparative profiling of the transcriptional response to infection in two species of Drosophila by short-read cDNA sequencing.BMC Genomics2009
20333214Population genomic inferences from sparse high-throughput sequencing of two populations of Drosophila melanogaster.Genome Biol Evol2009
18249460Evolution of protein-coding genes in Drosophila.Trends Genet2008
17987029Dynamic evolution of the innate immune system in Drosophila.Nat Genet2007
17994087Evolution of genes and genomes on the Drosophila phylogeny.Nature2007
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Collaborators

Co-authored papers 13
University of Rochester
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National Center for Biotechnology Information, National Institutes of Health
Co-authored papers 4
The Ohio State University
Co-authored papers 4
University of Illinois at Champaign-Urbana
Co-authored papers 4
University of Geneva Medical School
Co-authored papers 4
Harvard University
Co-authored papers 3
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University of Lausanne
Co-authored papers 3
Umea University
Co-authored papers 3
USDA-ARS Bee Research Laboratory
Co-authored papers 3
Indiana University
Co-authored papers 3
University of Tennessee Health Science Center
Co-authored papers 3
Institute of Clinical Molecular Biology, Kiel University
Co-authored papers 2
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Experimental Research Center, China Academy of Chinese Medical Sciences
Co-authored papers 2
National Marine Biodiversity Institute of Korea
Co-authored papers 2
Genomics Institute, University of California Santa Cruz
Co-authored papers 2
University of Georgia
Co-authored papers 2
The Roslin Institute & R(D)SVS, University of Edinburgh
Co-authored papers 2
Oxford Brookes University
Co-authored papers 2
University of Cincinnati College of Medicine
Co-authored papers 2
University of Cambridge
Co-authored papers 2
UC Santa Cruz Genomics Institute, University of California
Co-authored papers 2
Wellcome Sanger Institute
Co-authored papers 2
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The First Affiliated Hospital of Soochow University
Co-authored papers 2