Author details

Full Name

Donald C Rio

Affiliation

University of California berkeley

ORCID

Career Start Year

1979

Papers

136

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
37034741	Splicing accuracy varies across human introns, tissues and age.	bioRxiv	2023
36069759	Highly efficient generation of isogenic pluripotent stem cell models using prime editing.	Elife	2022
33352068	Mechanism and regulation of P element transposition.	Open Biol	2020
33055097	Widespread intron retention impairs protein homeostasis in C9orf72 ALS brains.	Genome Res	2020
31659330	Structure of a P element transposase-DNA complex reveals unusual DNA structures and GTP-DNA contacts.	Nat Struct Mol Biol	2019
30275071	Erratum: Electrophoretic Mobility Shift Assays for RNA-Protein Complexes.	Cold Spring Harb Protoc	2018
30104386	JUM is a computational method for comprehensive annotation-free analysis of alternative pre-mRNA splicing patterns.	Proc Natl Acad Sci U S A	2018
29863472	Striking circadian neuron diversity and cycling of <i>Drosophila</i> alternative splicing.	Elife	2018
30042133	Coordinate regulation of alternative pre-mRNA splicing events by the human RNA chaperone proteins hnRNPA1 and DDX5.	Genes Dev	2018
29211718	piRNA-mediated regulation of transposon alternative splicing in the soma and germ line.	Nature	2017
27114556	The PSI-U1 snRNP interaction regulates male mating behavior in Drosophila.	Proc Natl Acad Sci U S A	2016
27799520	Drosophila IRBP bZIP heterodimer binds P-element DNA and affects hybrid dysgenesis.	Proc Natl Acad Sci U S A	2016
25780207	Twenty years of RNA.	RNA	2015
26545814	Biochemical identification of new proteins involved in splicing repression at the Drosophila P-element exonic splicing silencer.	Genes Dev	2015
26543439	An Efficient Method for Electroporation of Small Interfering RNAs into ENCODE Project Tier 1 GM12878 and K562 Cell Lines.	J Biomol Tech	2015
26104714	P Transposable Elements in Drosophila and other Eukaryotic Organisms.	Microbiol Spectr	2015
25646498	Denaturation and electrophoresis of RNA with formaldehyde.	Cold Spring Harb Protoc	2015
25646499	Denaturation and electrophoresis of RNA with glyoxal.	Cold Spring Harb Protoc	2015
25734063	Northern blots: capillary transfer of RNA from agarose gels and filter hybridization using standard stringency conditions.	Cold Spring Harb Protoc	2015
25784052	Mechanisms and Regulation of Alternative Pre-mRNA Splicing.	Annu Rev Biochem	2015
24692495	Electrophoretic mobility shift assays for RNA-protein complexes.	Cold Spring Harb Protoc	2014
25368309	Reverse transcription-polymerase chain reaction.	Cold Spring Harb Protoc	2014
24987143	Northern blots for small RNAs and microRNAs.	Cold Spring Harb Protoc	2014
25086019	In vitro splicing reactions in Drosophila Kc nuclear extracts.	Cold Spring Harb Protoc	2014
25086018	Preparation of Drosophila Kc cell nuclear extracts for in vitro splicing.	Cold Spring Harb Protoc	2014
24890209	3'-End labeling of RNA with yeast Poly(A) polymerase and 3'-deoxyadenosine 5'-[Î±-32P]triphosphate.	Cold Spring Harb Protoc	2014
24591694	Large-scale immunopurification of ribonucleoprotein complexes from Drosophila nucleoplasmic extracts for tiling microarrays.	Cold Spring Harb Protoc	2014
24591693	Preparation of ribonucleoprotein-enriched nucleoplasmic extracts from Drosophila cells.	Cold Spring Harb Protoc	2014
24692496	5'-end labeling of RNA with [Î³-32P]ATP and T4 polynucleotide kinase.	Cold Spring Harb Protoc	2014
23349291	The human THAP9 gene encodes an active P-element DNA transposase.	Science	2013
24298030	Ultraviolet photochemical cross-linking to detect RNA-binding proteins.	Cold Spring Harb Protoc	2013
24184762	High-yield synthesis of RNA using T7 RNA polymerase and plasmid DNA or oligonucleotide templates.	Cold Spring Harb Protoc	2013
24184761	Expression and purification of active recombinant T7 RNA polymerase from E. coli.	Cold Spring Harb Protoc	2013
23392611	Two new and distinct roles for Drosophila Argonaute-2 in the nucleus: alternative pre-mRNA splicing and transcriptional repression.	Genes Dev	2013
23437125	The Drosophila splicing factor PSI is phosphorylated by casein kinase II and tousled-like kinase.	PLoS One	2013
23118360	In vitro transcription of labeled RNA: synthesis, capping, and substitution.	Cold Spring Harb Protoc	2012
23028069	Filter-binding assay for analysis of RNA-protein interactions.	Cold Spring Harb Protoc	2012
21233220	Distinct regulatory programs establish widespread sex-specific alternative splicing in Drosophila melanogaster.	RNA	2011
21865603	Identification and experimental validation of splicing regulatory elements in Drosophila melanogaster reveals functionally conserved splicing enhancers in metazoans.	RNA	2011
21878908	A segmental genomic duplication generates a functional intron.	Nat Commun	2011
21406555	Evolution of a tissue-specific splicing network.	Genes Dev	2011
21071404	An SF1 affinity model to identify branch point sequences in human introns.	Nucleic Acids Res	2011
20010837	THAP proteins target specific DNA sites through bipartite recognition of adjacent major and minor grooves.	Nat Struct Mol Biol	2010
20842711	A green fluorescent protein solubility screen in E. coli reveals domain boundaries of the GTP-binding domain in the P element transposase.	Protein Sci	2010
20516190	Determining the yield and quality of purified RNA.	Cold Spring Harb Protoc	2010
20516183	Nondenaturing agarose gel electrophoresis of RNA.	Cold Spring Harb Protoc	2010
20516182	Polyacrylamide gel electrophoresis of RNA.	Cold Spring Harb Protoc	2010
20516181	Removal of DNA from RNA.	Cold Spring Harb Protoc	2010
20516180	Removal of ribosomal subunits (and rRNA) from cytoplasmic extracts before solubilization with SDS and deproteinization.	Cold Spring Harb Protoc	2010
20516179	Preparation of cytoplasmic and nuclear RNA from tissue culture cells.	Cold Spring Harb Protoc	2010

1 - 50 of 136

Deirdre C Tatomer

University of Pennsylvania Perelman School of Medicine

Career Start Year 2006

Number of shared co-authors 0

Hans-Rudolf Hotz

Friedrich Miescher Institute for Biomedical Research

Career Start Year 1994

Number of shared co-authors 0

Timothy R Hughes

University of Toronto

Career Start Year 1992

Number of shared co-authors 1

Jeffrey J Delrow

Clinical Research Division, Fred Hutchinson Cancer Research Center

Career Start Year 1992

Number of shared co-authors 0

Benjamin J Blencowe

University of Toronto

Career Start Year 1989

Number of shared co-authors 1

Matthias Harbers

CellFree Sciences Co.

Career Start Year 1989

Number of shared co-authors 1

David A Wassarman

University of Wisconsin-Madison

Career Start Year 1988

Number of shared co-authors 4

Stephen Buratowski

Harvard Medical School

Career Start Year 1988

Number of shared co-authors 0

Karla M Neugebauer

Yale University

Career Start Year 1985

Number of shared co-authors 0

Johann Soret

Institut de Genetique Moleculaire de Montpellier, CNRS

Career Start Year 1985

Number of shared co-authors 0

Benoit Chabot

Agriculture and Agri-Food Canada

Career Start Year 1985

Number of shared co-authors 1

James T Kadonaga

University of California

Career Start Year 1983

Number of shared co-authors 6

Angus I Lamond

University of Dundee

Career Start Year 1982

Number of shared co-authors 0

Paul Lasko

McGill University. Montreal

Career Start Year 1981

Number of shared co-authors 3

Stephen M Mount

University of Maryland, College Park

Career Start Year 1980

Number of shared co-authors 4

Michael Shales

University of California, USA Quantitative Biosciences Institute (QBI) san francisco

Career Start Year 1980

Number of shared co-authors 3

Jef D Boeke

Institute for Systems Genetics, NYU School of Medicine

Career Start Year 1978

Number of shared co-authors 3

Kenneth C Burtis

University of California davis

Career Start Year 1976

Number of shared co-authors 3

Barbara J Wold

Merkin Institute for Translational Research, California Institute of Technology

Career Start Year 1976

Number of shared co-authors 2

Steven Henikoff

Fred Hutchinson Cancer Center

Career Start Year 1974

Number of shared co-authors 4

Thomas R Gingeras

Stanley Institute for Cognitive Genomics

Career Start Year 1974

Number of shared co-authors 7

Norma Neff

Stanford University

Career Start Year 1974

Number of shared co-authors 2

William M Gelbart

University of California Los Angeles

Career Start Year 1970

Number of shared co-authors 6

Jack F Greenblatt

College Street, University of Toronto

Career Start Year 1969

Number of shared co-authors 2

Tom Maniatis

College des medecins du Quebec

Career Start Year 1968

Number of shared co-authors 2

Christine Guthrie

University of California san francisco

Career Start Year 1967

Number of shared co-authors 0

William F Marzluff

University of North Carolina at Chapel Hill

Career Start Year 1966

Number of shared co-authors 1

Glauco P Tocchini-Valentini

Monterotondo Mouse Clinic (MMC), Italian National Research Council (CNR)

Career Start Year 1961

Number of shared co-authors 1

David Schlessinger

NIH/National Institute of Ageing

Career Start Year 1960

Number of shared co-authors 2

John S Mattick

Australia UNSW RNA Institute

Career Start Year 1951

Number of shared co-authors 3

row(s) 1 - 30 of 30

Marco Blanchette

Stowers Institute for Medical Research

Co-authored papers 13

Gregory J Hannon

Co-authored papers 11

Gerald M Rubin

The University of Florida

Co-authored papers 8

Steven E Brenner

University of California berkeley

Co-authored papers 7

Richard E Green

Co-authored papers 6

Sima Misra

University of California berkeley

Co-authored papers 3

Alan D Frankel

University of California san francisco

Co-authored papers 2

Jennifer A Doudna

Innovative Genomics Institute, University of California berkeley

Co-authored papers 2

Angela Brooks-Wilson

Co-authored papers 2

Richard M Myers

HudsonAlpha Institute for Biotechnology

Co-authored papers 2

Carlos Bustamante

University of California berkeley

Co-authored papers 2

Robert Castelo

Universitat Pompeu Fabra (UPF)

Co-authored papers 2

Michael R Botchan

University of California berkeley

Co-authored papers 2

Liana F Lareau

Co-authored papers 2

Arie Admon

Co-authored papers 2

Jacob E Corn

Co-authored papers 1

Gabriel G Haddad

university of california san diego

Co-authored papers 1

Michael B Eisen

Howard Hughes Medical Institute, University of California Berkeley

Co-authored papers 1

Michael Rosbash

Co-authored papers 1

Luke A Gilbert

Arc Institute

Co-authored papers 1

Michael Rape

Howard Hughes Medical Institute, University of California at Berkeley

Co-authored papers 1

Jasper Rine

University of California berkeley

Co-authored papers 1

Jiro C Yasuhara

University of California at Berkeley

Co-authored papers 1

Jan Rehwinkel

MRC Weatherall Institute of Molecular Medicine, University of Oxford

Co-authored papers 1

Yiannis A Savva

Brown University

Co-authored papers 1

Paul D Robbins

University of Minnesota

Co-authored papers 1

Susan E Celniker

Lawrence Berkeley National Laboratory

Co-authored papers 1

Stephen J Elledge

Howard Hughes Medical Institute, Brigham and Women's Hospital, Harvard Medical School

Co-authored papers 1

Todd R Laverty

Co-authored papers 1

Michael R Green

Co-authored papers 1

1 - 30

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