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Author Details

Erik Arner
RIKEN Center for Integrative Medical Sciences (IMS)
2002
79
33
PMIDPaper TitleJournal TitlePublished Year
37648852Gut microbial carbohydrate metabolism contributes to insulin resistance.Nature2023
35228658Subcutaneous adipose tissue expansion mechanisms are similar in early and late onset overweight/obesity.Int J Obes (Lond)2022
36443290PCGF1-PRC1 links chromatin repression with DNA replication during hematopoietic cell lineage commitment.Nat Commun2022
36070371Distinctive exercise-induced inflammatory response and exerkine induction in skeletal muscle of people with type 2 diabetes.Sci Adv2022
34011993Author Correction: RADICL-seq identifies general and cell type-specific principles of genome-wide RNA-chromatin interactions.Nat Commun2021
33891873Automatic identification of small molecules that promote cell conversion and reprogramming.Stem Cell Reports2021
33836165Development of p53 knockout U87MG cell line for unbiased drug delivery testing system using CRISPR-Cas9 and transcriptomic analysis.J Biotechnol2021
34382191Analysis of Enhancer-Promoter Interactions using CAGE and RADICL-Seq Technologies.Methods Mol Biol2021
34491989ReFeaFi: Genome-wide prediction of regulatory elements driving transcription initiation.PLoS Comput Biol2021
32719792The Transcriptional Network That Controls Growth Arrest and Macrophage Differentiation in the Human Myeloid Leukemia Cell Line THP-1.Front Cell Dev Biol2020
32094342RADICL-seq identifies general and cell type-specific principles of genome-wide RNA-chromatin interactions.Nat Commun2020
30664627C1 CAGE detects transcription start sites and enhancer activity at single-cell resolution.Nat Commun2019
31772269A framework for identification of on- and off-target transcriptional responses to drug treatment.Sci Rep2019
31533632Identification of novel cerebellar developmental transcriptional regulators with motif activity analysis.BMC Genomics2019
31557715Detailed Functional Characterization of a Waist-Hip Ratio Locus in 7p15.2 Defines an Enhancer Controlling Adipocyte Differentiation.iScience2019
31554889MicroRNA-27a/b-3p and PPARG regulate SCAMP3 through a feed-forward loop during adipogenesis.Sci Rep2019
29325522Correction to: Relatively frequent switching of transcription start sites during cerebellar development.BMC Genomics2018
30177712Promoter Usage and Dynamics in Vascular Smooth Muscle Cells Exposed to Fibroblast Growth Factor-2 or Interleukin-1β.Sci Rep2018
30089658Conserved temporal ordering of promoter activation implicates common mechanisms governing the immediate early response across cell types and stimuli.Open Biol2018
29712924Transcriptional landscape of Mycobacterium tuberculosis infection in macrophages.Sci Rep2018
29307116Discovery of Transcription Factors Novel to Mouse Cerebellar Granule Cell Development Through Laser-Capture Microdissection.Cerebellum2018
27803022Transcriptional Dynamics During Human Adipogenesis and Its Link to Adipose Morphology and Distribution.Diabetes2017
28241135An atlas of human long non-coding RNAs with accurate 5' ends.Nature2017
28263993Analysis of the human monocyte-derived macrophage transcriptome and response to lipopolysaccharide provides new insights into genetic aetiology of inflammatory bowel disease.PLoS Genet2017
28961713Genome-scale regression analysis reveals a linear relationship for promoters and enhancers after combinatorial drug treatment.Bioinformatics2017
28829439An integrated expression atlas of miRNAs and their promoters in human and mouse.Nat Biotechnol2017
28850106FANTOM5 CAGE profiles of human and mouse samples.Sci Data2017
28927749Transcriptome Analysis Uncovers a Growth-Promoting Activity of Orosomucoid-1 on Hepatocytes.EBioMedicine2017
28873399Systematic analysis of transcription start sites in avian development.PLoS Biol2017
28630459Abdominal subcutaneous adipose tissue cellularity in men and women.Int J Obes (Lond)2017
27789687Discriminative identification of transcriptional responses of promoters and enhancers after stimulus.Nucleic Acids Res2017
27001520Functional annotation of the vlinc class of non-coding RNAs using systems biology approach.Nucleic Acids Res2016
27508231Datasets of genes coexpressed with FBN1 in mouse adipose tissue and during human adipogenesis.Data Brief2016
27199372DeepCAGE transcriptomics identify HOXD10 as a transcription factor regulating lymphatic endothelial responses to VEGF-C.J Cell Sci2016
27386756Expression of FBN1 during adipogenesis: Relevance to the lipodystrophy phenotype in Marfan syndrome and related conditions.Mol Genet Metab2016
25723102Gateways to the FANTOM5 promoter level mammalian expression atlas.Genome Biol2015
26658111Application of Gene Expression Trajectories Initiated from ErbB Receptor Activation Highlights the Dynamics of Divergent Promoter Usage.PLoS One2015
26673794Remodeling of retrotransposon elements during epigenetic induction of adult visual cortical plasticity by HDAC inhibitors.Epigenetics Chromatin2015
26549461DeepCAGE Transcriptomics Reveal an Important Role of the Transcription Factor MAFB in the Lymphatic Endothelium.Cell Rep2015
26179713Promoter-level expression clustering identifies time development of transcriptional regulatory cascades initiated by ErbB receptors in breast cancer cells.Sci Rep2015
26117544Redefining the transcriptional regulatory dynamics of classically and alternatively activated macrophages by deepCAGE transcriptomics.Nucleic Acids Res2015
26190649Transplanted Bone Marrow-Derived Cells Contribute to Human Adipogenesis.Cell Metab2015
25885578Transcriptional dynamics reveal critical roles for non-coding RNAs in the immediate-early response.PLoS Comput Biol2015
25678556Transcribed enhancers lead waves of coordinated transcription in transitioning mammalian cells.Science2015
25666530Adipose tissue morphology predicts improved insulin sensitivity following moderate or pronounced weight loss.Int J Obes (Lond)2015
25791133Low early B-cell factor 1 (EBF1) activity in human subcutaneous adipose tissue is linked to a pernicious metabolic profile.Diabetes Metab2015
24379347Additive effects of microRNAs and transcription factors on CCL2 production in human white adipose tissue.Diabetes2014
24760260Changes in subcutaneous fat cell volume and insulin sensitivity after weight loss.Diabetes Care2014
24856929Early B cell factor 1 regulates adipocyte morphology and lipolysis in white adipose tissue.Cell Metab2014
24670763An atlas of active enhancers across human cell types and tissues.Nature2014
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Collaborators

Yoshihide Hayashizaki
Center for Integrative Medical Sciences
Co-authored papers 36
Piero Carninci
RIKEN Center for Integrative Medical Sciences
Co-authored papers 35
Carsten O Daub
International Institute of Molecular and Cell Biology in Warsaw
Co-authored papers 29
Hideya Kawaji
RIKEN Center for Integrative Medical Sciences
Co-authored papers 28
Timo Lassmann
Telethon Kids Institute, University of Western Australia
Co-authored papers 28
Alistair R R Forrest
RIKEN Center for Integrative Medical Sciences
Co-authored papers 28
Peter Arner
Karolinska Institutet at Karolinska Hospital-Huddinge
Co-authored papers 26
Masayoshi Itoh
RIKEN Center for Integrative Medical Sciences
Co-authored papers 26
Dave S B Hoon
Saint John's Cancer Institute at Saint John's Health Center
Co-authored papers 19
Mikael Rydén
Co-authored papers 17
Harukazu Suzuki
RIKEN Center for Integrative Medical Sciences
Co-authored papers 17
Niklas Mejhert
Karolinska Institutet
Co-authored papers 12
Takeya Kasukawa
RIKEN Center for Integrative Medical Sciences
Co-authored papers 11
Marina Lizio
Cerevance Ltd
Co-authored papers 10
Albin Sandelin
University of Copenhagen
Co-authored papers 9
Mariko Okada-Hatakeyama
Institute for Protein Research, Osaka University
Co-authored papers 9
Jessica Severin
Center for Integrative Medical Sciences
Co-authored papers 9
Andreas Lennartsson
Karolinska Institute
Co-authored papers 8
Takahiro Arakawa
Tokyo University of Technology
Co-authored papers 8
Michael Rehli
University Hospital Regensburg
Co-authored papers 8
Kim M Summers
Mater Research Institute-University of Queensland, Translational Research Institute
Co-authored papers 8
David A Hume
Mater Research Institute-UQ, Translational Research Institute
Co-authored papers 8
Akira Hasegawa
RIKEN Center for Integrative Medical Sciences
Co-authored papers 8
Robin Andersson
University of Copenhagen
Co-authored papers 7
Thomas J Ha
University of British Columbia and BC Children's Hospital
Co-authored papers 7
Jun Kawai
RIKEN Center for Integrative Medical Sciences
Co-authored papers 7
Christine A Wells
The University of Melbourne
Co-authored papers 7
Nicolas Bertin
University Bordeaux, CNRS
Co-authored papers 7
Peter Zhang
Child and Family Research Institute, University of British Columbia
Co-authored papers 7
Dan Goldowitz
University of British Columbia
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