Author details

Full Name

Charles Christoffer

Affiliation

ORCID

Career Start Year

2015

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
36529945	Modeling protein-nucleic acid complexes with extremely large conformational changes using Flex-LZerD.	Proteomics	2023
37905971	Impact of AlphaFold on structure prediction of protein complexes: The CASP15-CAPRI experiment.	Proteins	2023
37961264	Assembly of Protein Complexes In and On the Membrane with Predicted Spatial Arrangement Constraints.		2023
37450159	Pairwise and Multi-chain Protein Docking Enhanced Using LZerD Web Server.	Methods Mol Biol	2023
37365936	Discriminating physiological from non-physiological interfaces in structures of protein complexes: A community-wide study.	Proteomics	2023
34959149	Surface-based protein domains retrieval methods from a SHREC2021 challenge.	J Mol Graph Model	2022
35383281	Real-time structure search and structure classification for AlphaFold protein models.	Commun Biol	2022
36090027	RL-MLZerD: Multimeric protein docking using reinforcement learning.	Front Mol Biosci	2022
36089054	Domain-Based Protein Docking with Extremely Large Conformational Changes.	J Mol Biol	2022
34466411	LZerD Protein-Protein Docking Webserver Enhanced With <i>de novo</i> Structure Prediction.	Front Mol Biosci	2021
33963854	LZerD webserver for pairwise and multiple protein-protein docking.	Nucleic Acids Res	2021
33942205	Kinetic and structural parameters governing Fic-mediated adenylylation/AMPylation of the Hsp70 chaperone, BiP/GRP78.	Cell Stress Chaperones	2021
33828153	Analyzing effect of quadruple multiple sequence alignments on deep learning based protein inter-residue distance prediction.	Sci Rep	2021
33828103	VESPER: global and local cryo-EM map alignment using local density vectors.	Nat Commun	2021
32621228	IDP-LZerD: Software for Modeling Disordered Protein Interactions.	Methods Mol Biol	2020
31746961	Protein docking model evaluation by 3D deep convolutional neural networks.	Bioinformatics	2020
31697428	Performance and enhancement of the LZerD protein assembly pipeline in CAPRI 38-46.	Proteins	2020
31583633	Path-LZerD: Predicting Assembly Order of Multimeric Protein Complexes.	Methods Mol Biol	2020
32599506	Computational structure modeling for diverse categories of macromolecular interactions.	Curr Opin Struct Biol	2020
30978181	A global map of the protein shape universe.	PLoS Comput Biol	2019
31612567	Blind prediction of homo- and hetero-protein complexes: The CASP13-CAPRI experiment.	Proteins	2019
29329283	Modeling the assembly order of multimeric heteroprotein complexes.	PLoS Comput Biol	2018
28394890	Modeling disordered protein interactions from biophysical principles.	PLoS Comput Biol	2017
28802714	In silico structure-based approaches to discover protein-protein interaction-targeting drugs.	Methods	2017
27500657	PL-PatchSurfer2: Improved Local Surface Matching-Based Virtual Screening Method That Is Tolerant to Target and Ligand Structure Variation.	J Chem Inf Model	2016
26025554	Navigating 3D electron microscopy maps with EM-SURFER.	BMC Bioinformatics	2015