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Author Details

Ryan T Fellers
Northwestern University
2013
54
27
Emma Lundberg (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
37333327MSModDetector: A Tool for Detecting Mass Shifts and Post-Translational Modifications in Individual Ion Mass Spectrometry Data.bioRxiv2023
37561601Identification of Splice Variants and Isoforms in Transcriptomics and Proteomics.Annu Rev Biomed Data Sci2023
37750863Advancing Intact Protein Quantitation with Updated Deconvolution Routines.Anal Chem2023
37838706Automated imaging and identification of proteoforms directly from ovarian cancer tissue.Nat Commun2023
37774690Orbitrap Mass Spectrometry and High-Field Asymmetric Waveform Ion Mobility Spectrometry (FAIMS) Enable the in-Depth Analysis of Human Serum Proteoforms.J Proteome Res2023
38040721Author Correction: Automated imaging and identification of proteoforms directly from ovarian cancer tissue.Nat Commun2023
37252723Improved Label-Free Quantification of Intact Proteoforms Using Field Asymmetric Ion Mobility Spectrometry.Anal Chem2023
37436406ProSight Native: Defining Protein Complex Composition from Native Top-Down Mass Spectrometry Data.J Proteome Res2023
34986596The Human Proteoform Atlas: a FAIR community resource for experimentally derived proteoforms.Nucleic Acids Res2022
35446460Proteoform-Selective Imaging of Tissues Using Mass Spectrometry.Angew Chem Int Ed Engl2022
36475650Middle-Down Mass Spectrometry Reveals Activity-Modifying Phosphorylation Barcode in a Class C G Protein-Coupled Receptor.J Am Chem Soc2022
35947651Highly multiplexed, label-free proteoform imaging of tissues by individual ion mass spectrometry.Sci Adv2022
35290070Proteomics Standards Initiative's ProForma 2.0: Unifying the Encoding of Proteoforms and Peptidoforms.J Proteome Res2022
35286768ProSight Annotator: Complete control and customization of protein entries in UniProt XML files.Proteomics2022
34878788Next-Generation Serology by Mass Spectrometry: Readout of the SARS-CoV-2 Antibody Repertoire.J Proteome Res2022
35084980The Blood Proteoform Atlas: A reference map of proteoforms in human hematopoietic cells.Science2022
34268518Next-generation Serology by Mass Spectrometry: Readout of the SARS-CoV-2 Antibody Repertoire.medRxiv2021
32436704Using 10,000 Fragment Ions to Inform Scoring in Native Top-down Proteomics.J Am Soc Mass Spectrom2020
31888965Thorough Performance Evaluation of 213 nm Ultraviolet Photodissociation for Top-down Proteomics.Mol Cell Proteomics2020
32123391Multiplexed mass spectrometry of individual ions improves measurement of proteoforms and their complexes.Nat Methods2020
30647073Accurate Estimation of Context-Dependent False Discovery Rates in Top-Down Proteomics.Mol Cell Proteomics2019
31714757Proton Transfer Charge Reduction Enables High-Throughput Top-Down Analysis of Large Proteoforms.Anal Chem2019
31550894Multidimensional Top-Down Proteomics of Brain-Region-Specific Mouse Brain Proteoforms Responsive to Cocaine and Estradiol.J Proteome Res2019
31451767A five-level classification system for proteoform identifications.Nat Methods2019
31050378Identification and Quantification of Proteoforms by Mass Spectrometry.Proteomics2019
29481055Top-Down Proteomics Enables Comparative Analysis of Brain Proteoforms Between Mouse Strains.Anal Chem2018
29924586The Value of Activated Ion Electron Transfer Dissociation for High-Throughput Top-Down Characterization of Intact Proteins.Anal Chem2018
29894161Accurate Sequence Analysis of a Monoclonal Antibody by Top-Down and Middle-Down Orbitrap Mass Spectrometry Applying Multiple Ion Activation Techniques.Anal Chem2018
29649363A Targeted, Differential Top-Down Proteomic Methodology for Comparison of ApoA-I Proteoforms in Individuals with High and Low HDL Efflux Capacity.J Proteome Res2018
29722972Capillary HILIC-MS: A New Tool for Sensitive Top-Down Proteomics.Anal Chem2018
29610327Precise characterization of KRAS4b proteoforms in human colorectal cells and tumors reveals mutation/modification cross-talk.Proc Natl Acad Sci U S A2018
27936753Identification and Characterization of Human Proteoforms by Top-Down LC-21 Tesla FT-ICR Mass Spectrometry.J Proteome Res2017
28412815High-Throughput Analysis of Intact Human Proteins Using UVPD and HCD on an Orbitrap Mass Spectrometer.J Proteome Res2017
28152595Advancing Top-down Analysis of the Human Proteome Using a Benchtop Quadrupole-Orbitrap Mass Spectrometer.J Proteome Res2017
28374316Modulation of Protein Fragmentation Through Carbamylation of Primary Amines.J Am Soc Mass Spectrom2017
28374312Defining Gas-Phase Fragmentation Propensities of Intact Proteins During Native Top-Down Mass Spectrometry.J Am Soc Mass Spectrom2017
28150248Bioinformatics Analysis of Top-Down Mass Spectrometry Data with ProSight Lite.Methods Mol Biol2017
28510335Proteoforms in Peripheral Blood Mononuclear Cells as Novel Rejection Biomarkers in Liver Transplant Recipients.Am J Transplant2017
28842697Diversity of Amyloid-beta Proteoforms in the Alzheimer's Disease Brain.Sci Rep2017
25952688Targeted analysis of recombinant NF kappa B (RelA/p65) by denaturing and native top down mass spectrometry.J Proteomics2016
26272979Unabridged Analysis of Human Histone H3 by Differential Top-Down Mass Spectrometry Reveals Hypermethylated Proteoforms from MMSET/NSD2 Overexpression.Mol Cell Proteomics2016
26503891Integrated Bottom-Up and Top-Down Proteomics of Patient-Derived Breast Tumor Xenografts.Mol Cell Proteomics2016
27120713Comparative top down proteomics of peripheral blood mononuclear cells from kidney transplant recipients with normal kidney biopsies or acute rejection.Proteomics2016
26780093An informatic framework for decoding protein complexes by top-down mass spectrometry.Nat Methods2016
26795204Quantitation and Identification of Thousands of Human Proteoforms below 30 kDa.J Proteome Res2016
25716753Analyzing internal fragmentation of electrosprayed ubiquitin ions during beam-type collisional dissociation.J Am Soc Mass Spectrom2015
25828799ProSight Lite: graphical software to analyze top-down mass spectrometry data.Proteomics2015
24447299Ultraviolet photodissociation for characterization of whole proteins on a chromatographic time scale.Anal Chem2014
24807621Applying label-free quantitation to top down proteomics.Anal Chem2014
24922115The C-score: a Bayesian framework to sharply improve proteoform scoring in high-throughput top down proteomics.J Proteome Res2014
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Collaborators

Neil L Kelleher
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Co-authored papers 9
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Michael R Shortreed
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Ljiljana Pa??a-Toli??
Pacific Northwest National Laboratory
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Si Wu
The Fourth Hospital of Hebei Medical University
Co-authored papers 2
Josiah E Hutton
and the Feinberg School of Medicine, Northwestern University
Co-authored papers 2
Leah V Schaffer (CM4AI)
University of California San Diego
Co-authored papers 2
Lloyd M Smith
University of Wisconsin-Madison College of Letters and Sciences
Co-authored papers 2
Josh Levitsky
Feinberg School of Medicine, Northwestern University
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Jacek W Sikora
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Jonathan V Sweedler
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Release 1.2