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Author Details

Alexey I Nesvizhskii
University of Michigan ann arbor
1994
205
67
Emma Lundberg (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36203013Post-translational modifications reshape the antigenic landscape of the MHC I immunopeptidome in tumors.Nat Biotechnol2023
36203013Post-translational modifications reshape the antigenic landscape of the MHC I immunopeptidome in tumors.Nat Biotechnol2023
37607007A hybrid breast cancer/mesenchymal stem cell population enhances chemoresistance and metastasis.JCI Insight2023
37844105Identification of LMAN1- and SURF4-Dependent Secretory Cargoes.J Proteome Res2023
37738129Solid-Phase Compatible Silane-Based Cleavable Linker Enables Custom Isobaric Quantitative Chemoproteomics.J Am Chem Soc2023
37737643Mass Spectrometric Profiling of HLA-B44 Peptidomes Provides Evidence for Tapasin-Mediated Tryptophan Editing.J Immunol2023
37910016Autoinhibited kinesin-1 adopts a hierarchical folding pattern.Elife2023
37645963Multi-omic stratification of the missense variant cysteinome.bioRxiv2023
37894717The Intrinsically Disordered N Terminus in Atg12 from Yeast Is Necessary for the Functional Structure of the Protein.Int J Mol Sci2023
37878603Efficient Analysis of Proteome-Wide FPOP Data by FragPipe.Anal Chem2023
36909546Mass spectrometric profiling of HLA-B44 peptidomes provides evidence for tapasin-mediated tryptophan editing.bioRxiv2023
37467362Statistical Detection of Differentially Abundant Proteins in Experiments with Repeated Measures Designs and Isobaric Labeling.J Proteome Res2023
37333157Efficient Analysis of Proteome-wide FPOP Data by FragPipe.bioRxiv2023
37018319MSstats Version 4.0: Statistical Analyses of Quantitative Mass Spectrometry-Based Proteomic Experiments with Chromatography-Based Quantification at Scale.J Proteome Res2023
36637389Evaluating Linear Ion Trap for MS3-Based Multiplexed Single-Cell Proteomics.Anal Chem2023
37066360Identification of LMAN1 and SURF4 dependent secretory cargoes.bioRxiv2023
37004988MSFragger-Labile: A Flexible Method to Improve Labile PTM Analysis in Proteomics.Mol Cell Proteomics2023
36747757Autoinhibited kinesin-1 adopts a hierarchical folding pattern.bioRxiv2023
36475762Implementing the MSFragger Search Engine as a Node in Proteome Discoverer.J Proteome Res2023
37438360Detecting diagnostic features in MS/MS spectra of post-translationally modified peptides.Nat Commun2023
37308510Unraveling the glycosylated immunopeptidome with HLA-Glyco.Nat Commun2023
37541199Proteogenomic analysis of chemo-refractory high-grade serous ovarian cancer.Cell2023
36525809Recent advances in computational algorithms and software for large-scale glycoproteomics.Curr Opin Chem Biol2023
37910016Autoinhibited kinesin-1 adopts a hierarchical folding pattern.Elife2023
37894717The Intrinsically Disordered N Terminus in Atg12 from Yeast Is Necessary for the Functional Structure of the Protein.Int J Mol Sci2023
37844105Identification of LMAN1- and SURF4-Dependent Secretory Cargoes.J Proteome Res2023
37738129Solid-Phase Compatible Silane-Based Cleavable Linker Enables Custom Isobaric Quantitative Chemoproteomics.J Am Chem Soc2023
37737643Mass Spectrometric Profiling of HLA-B44 Peptidomes Provides Evidence for Tapasin-Mediated Tryptophan Editing.J Immunol2023
37878603Efficient Analysis of Proteome-Wide FPOP Data by FragPipe.Anal Chem2023
37645963Multi-omic stratification of the missense variant cysteinome.bioRxiv2023
37541199Proteogenomic analysis of chemo-refractory high-grade serous ovarian cancer.Cell2023
37607007A hybrid breast cancer/mesenchymal stem cell population enhances chemoresistance and metastasis.JCI Insight2023
37018319MSstats Version 4.0: Statistical Analyses of Quantitative Mass Spectrometry-Based Proteomic Experiments with Chromatography-Based Quantification at Scale.J Proteome Res2023
37308510Unraveling the glycosylated immunopeptidome with HLA-Glyco.Nat Commun2023
37467362Statistical Detection of Differentially Abundant Proteins in Experiments with Repeated Measures Designs and Isobaric Labeling.J Proteome Res2023
37438360Detecting diagnostic features in MS/MS spectra of post-translationally modified peptides.Nat Commun2023
37004988MSFragger-Labile: A Flexible Method to Improve Labile PTM Analysis in Proteomics.Mol Cell Proteomics2023
37333157Efficient Analysis of Proteome-wide FPOP Data by FragPipe.bioRxiv2023
37066360Identification of LMAN1 and SURF4 dependent secretory cargoes.bioRxiv2023
36475762Implementing the MSFragger Search Engine as a Node in Proteome Discoverer.J Proteome Res2023
36747757Autoinhibited kinesin-1 adopts a hierarchical folding pattern.bioRxiv2023
36909546Mass spectrometric profiling of HLA-B44 peptidomes provides evidence for tapasin-mediated tryptophan editing.bioRxiv2023
36637389Evaluating Linear Ion Trap for MS3-Based Multiplexed Single-Cell Proteomics.Anal Chem2023
36525809Recent advances in computational algorithms and software for large-scale glycoproteomics.Curr Opin Chem Biol2023
35195394Enhancing Cysteine Chemoproteomic Coverage through Systematic Assessment of Click Chemistry Product Fragmentation.Anal Chem2022
35973625Identification of secreted proteins by comparison of protein abundance in conditioned media and cell lysates.Anal Biochem2022
35963242EML2-S constitutes a new class of proteins that recognizes and regulates the dynamics of tyrosinated microtubules.Curr Biol2022
35803928dia-PASEF data analysis using FragPipe and DIA-NN for deep proteomics of low sample amounts.Nat Commun2022
36265488RAD51AP1 regulates ALT-HDR through chromatin-directed homeostasis of TERRA.Mol Cell2022
35780830GRASP55 regulates the unconventional secretion and aggregation of mutant huntingtin.J Biol Chem2022
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Harvard Medical School
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Collaborators

Ruedi Aebersold
Institute of Molecular Systems Biology, ETH Zurich
Co-authored papers 29
Felipe da Veiga Leprevost
University of Michigan ann arbor
Co-authored papers 23
Anne-Claude Gingras
Lunenfeld-Tanenbaum Research Institute
Co-authored papers 17
Arul M Chinnaiyan
University of Michigan Medical School.
Co-authored papers 16
Damian Fermin
Co-authored papers 16
Guo Ci Teo
Co-authored papers 13
Dmitry M Avtonomov
Co-authored papers 12
Gilbert S Omenn
and School of Public Health, University of Michigan ann arbor
Co-authored papers 12
Jimmy K Eng
University of Washington
Co-authored papers 12
Eric W Deutsch
Institute for Systems Biology
Co-authored papers 10
Saravana M Dhanasekaran
Co-authored papers 8
Hui-Yin Chang
Co-authored papers 8
Marcin Cieslik
Co-authored papers 8
Brian Raught
Princess Margaret Cancer Centre, University Health Network
Co-authored papers 7
Andy T Kong
Co-authored papers 7
Yu-Ju Chen
Institute of Chemistry
Co-authored papers 6
Eugene Kolker
Co-authored papers 6
Mike Tyers
Institute for Research in Immunology and Cancer (IRIC), Universite de Montreal
Co-authored papers 6
Olga Vitek
Khoury College of Computer Sciences, Northeastern University
Co-authored papers 6
Bing Zhang
Baylor College of Medicine
Co-authored papers 6
David R Goodlett
University of Victoria
Co-authored papers 6
Philip C Andrews
Sydney Children's Hospital, University of New South Wales
Co-authored papers 5
Henry Rodriguez
Office of Cancer Clinical Proteomics Research, National Cancer Institute
Co-authored papers 5
Emily S Boja
Office of Cancer Clinical Proteomics Research, National Cancer Institute
Co-authored papers 5
Christopher R Kinsinger
Co-authored papers 5
Mehdi Mesri
Co-authored papers 5
Chia-Feng Tsai
Pacific Northwest National Laboratory
Co-authored papers 5
Xuhong Cao
Michigan Center for Translational Pathology.
Co-authored papers 5
Tara Hiltke
Office of Cancer Clinical Proteomics Research, National Cancer Institute
Co-authored papers 5
Lukas Reiter
Co-authored papers 5
Release 1.2