Author details

Full Name

Alexander Kel

Affiliation

ORCID

Career Start Year

1988

Papers

134

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
36975604	Epigenome-Wide Changes in the Cell Layers of the Vein Wall When Exposing the Venous Endothelium to Oscillatory Shear Stress.		2023
37237151	Comparative analysis of deeply phenotyped GBM cohorts of 'short-term' and 'long-term' survivors.	J Neurooncol	2023
34757068	Transcriptome Analysis Reveals Intrinsic Proinflammatory Signaling in Healthy African American Skin.		2022
35711675	Master Transcription Regulators and Transcription Factors Regulate Immune-Associated Differences Between Patients of African and European Ancestry With Colorectal Cancer.	Gastro Hep Adv	2022
35737155	Prediction of EVT6-NTRK3-Dependent Papillary Thyroid Cancer Using Minor Expression Profile.	Bulletin of Experimental Biology and Medicine	2022
35536253	BioUML-towards a universal research platform.	Nucleic Acids Research	2022
34772928	An integrative proteomics method identifies a regulator of translation during stem cell maintenance and differentiation.	Nat Commun	2021
34211498	IGFBP2 Is a Potential Master Regulator Driving the Dysregulated Gene Network Responsible for Short Survival in Glioblastoma Multiforme.	Frontiers in Genetics	2021
34142527	[Master regulators associated with poor prognosis in glioblastoma multiforme].		2021
33231677	GTRD: an integrated view of transcription regulation.	Nucleic Acids Res	2021
32874597	Phenotypic selection through cell death: stochastic modelling of O-6-methylguanine-DNA methyltransferase dynamics.	Royal Society Open Science	2020
32075696	Towards a European health research and innovation cloud (HRIC).	Genome Med	2020
32012706	Role of Phagocytosis in the Pro-Inflammatory Response in LDL-Induced Foam Cell Formation; a Transcriptome Analysis.	International Journal of Molecular Sciences	2020
32295185	Signaling Pathways Potentially Responsible for Foam Cell Formation: Cholesterol Accumulation or Inflammatory Response-What is First?	Int J Mol Sci	2020
30999858	Walking pathways with positive feedback loops reveal DNA methylation biomarkers of colorectal cancer.	BMC Bioinformatics	2019
31523389	Deep insights into the response of human cervical carcinoma cells to a new cyano enone-bearing triterpenoid soloxolone methyl: a transcriptome analysis.	Oncotarget	2019
31131402	BioUML: an integrated environment for systems biology and collaborative analysis of biomedical data.	Nucleic Acids Research	2019
29504919	Computational master-regulator search reveals mTOR and PI3K pathways responsible for low sensitivity of NCI-H292 and A427 lung cancer cell lines to cytotoxic action of p53 activator Nutlin-3.	BMC Medical Genomics	2018
30408727	BRCA-analyzer: Automatic workflow for processing NGS reads of BRCA1 and BRCA2 genes.		2018
30070582	DNA methylation and gene expression profiling reveal MFAP5 as a regulatory driver of extracellular matrix remodeling in varicose vein disease.	Epigenomics	2018
30205792	Modified LDL Particles Activate Inflammatory Pathways in Monocyte-derived Macrophages: Transcriptome Analysis.	Curr Pharm Des	2018
29854901	Corrigendum to "Data on master regulators and transcription factor binding sites found by upstream analysis of multi-omics data on methotrexate resistance of colon cancer" [Data Brief. 10 (2016) 499-504].	Data in Brief	2018
29737431	Mycoplasma hyorhinis reduces sensitivity of human lung carcinoma cells to Nutlin-3 and promotes their malignant phenotype.	Journal of Cancer Research and Clinical Oncology	2018
28098247	c-Jun N-terminal kinase 2 promotes enterocyte survival and goblet cell differentiation in the inflamed intestine.	Mucosal Immunology	2017
28849562	Search for Master Regulators in Walking Cancer Pathways.	Methods in Molecular Biology	2017
28715235	cutPrimers: A New Tool for Accurate Cutting of Primers from Reads of Targeted Next Generation Sequencing.	Journal of Computational Biology	2017
28486110	Ablation of Key Oncogenic Pathways by RITA-Reactivated p53 Is Required for Efficient Apoptosis.	Cancer Cell	2017
29141011	Nucleotide patterns aiding in prediction of eukaryotic promoters.	PLoS One	2017
27924024	GTRD: a database of transcription factor binding sites identified by ChIP-seq experiments.	Nucleic Acids Research	2017
28054015	Data on master regulators and transcription factor binding sites found by upstream analysis of multi-omics data on methotrexate resistance of colon cancer.	Data in Brief	2017
26738778	Detecting reliable non interacting proteins (NIPs) significantly enhancing the computational prediction of protein-protein interactions using machine learning methods.	Molecular BioSystems	2016
29900118	Prediction of protein-DNA interactions of transcription factors linking proteomics and transcriptomics data.	EuPA Open Proteomics	2016
29900117	Multi-omics "upstream analysis" of regulatory genomic regions helps identifying targets against methotrexate resistance of colon cancer.	EuPA Open Proteomics	2016
27600225	Upstream Analysis: An Integrated Promoter-Pathway Analysis Approach to Causal Interpretation of Microarray Data.	Microarrays	2015
27032247	[THE BIOMARKERS FOR TIMELY DIAGNOSTICS OF COLORECTAL CANCER].	Klinichescheskaya Laboratornaya Diagnostika	2015
25100017	Equal impact of diffusion and DNA binding rates on the potential spatial distribution of nuclear factor ÎºB transcription factor inside the nucleus.	Biochemistry (Moscow)	2014
24413150	ROS-dependent activation of JNK converts p53 into an efficient inhibitor of oncogenes leading to robust apoptosis.	Cell Death Differ	2014
24456465	Toward more transparent and reproducible omics studies through a common metadata checklist and data publications.	OMICS	2014
24564249	Integrated Bio-Search: challenges and trends for the integration, search and comprehensive processing of biological information.	BMC Bioinformatics	2014
23555204	A discriminative approach for unsupervised clustering of DNA sequence motifs.	PLoS Computational Biology	2013
27447251	Toward More Transparent and Reproducible Omics Studies Through a Common Metadata Checklist and Data Publications.	Big Data	2013
23924163	MatrixCatch--a novel tool for the recognition of composite regulatory elements in promoters.	BMC Bioinformatics	2013
22790872	Insights into p53 transcriptional function via genome-wide chromatin occupancy and gene expression analysis.	Cell Death and Differentiation	2012
22354779	Mild mitochondrial uncoupling does not affect mitochondrial biogenesis but downregulates pyruvate carboxylase in adipocytes: role for triglyceride content reduction.	American Journal of Physiology - Endocrinology and Metabolism	2012
22693215	3DTF: a web server for predicting transcription factor PWMs using 3D structure-based energy calculations.	Nucleic Acids Research	2012
21862591	Inhibition of glycolytic enzymes mediated by pharmacologically activated p53: targeting Warburg effect to fight cancer.	J Biol Chem	2011
21464922	Advanced computational biology methods identify molecular switches for malignancy in an EGF mouse model of liver cancer.	PLoS ONE	2011
21093613	Identification of key mechanisms controlling gene expression in Leishmania infected macrophages using genome-wide promoter analysis.	Infect Genet Evol	2011
20537135	Functional classification of proteins based on projection of amino acid sequences: application for prediction of protein kinase substrates.	BMC Bioinformatics	2010
21254565	[Comparative analysis of the DXPas34 regulatory region in rodents].	Genetika	2010