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| 36806474 | EvolClustDB: Exploring Eukaryotic Gene Clusters with Evolutionarily Conserved Genomic Neighbourhoods. | J Mol Biol | 2023 |
| 37124042 | Whole genome analysis of two sympatric human <i>Mansonella</i>: <i>Mansonella perstans</i> and <i>Mansonella</i> sp "DEUX". | Front Cell Infect Microbiol | 2023 |
| 34718760 | PhylomeDB V5: an expanding repository for genome-wide catalogues of annotated gene phylogenies. | Nucleic Acids Res | 2022 |
| 35583263 | Chromosome-level assembly, annotation and phylome of Pelobates cultripes, the western spadefoot toad. | DNA Res | 2022 |
| 35766381 | Examination of Genome-Wide Ortholog Variation in Clinical and Environmental Isolates of the Fungal Pathogen Aspergillus fumigatus. | mBio | 2022 |
| 35835427 | Evolutionary analyses of genes in Echinodermata offer insights towards the origin of metazoan phyla. | Genomics | 2022 |
| 35552456 | The Quest for Orthologs orthology benchmark service in 2022. | Nucleic Acids Res | 2022 |
| 36209154 | Chromosome-level assemblies from diverse clades reveal limited structural and gene content variation in the genome of Candida glabrata. | BMC Biol | 2022 |
| 35007279 | Chromatin profiling reveals heterogeneity in clinical isolates of the human pathogen Aspergillus fumigatus. | PLoS Genet | 2022 |
| 33106602 | Timing the origin of eukaryotic cellular complexity with ancient duplications. | Nat Ecol Evol | 2021 |
| 33906412 | Shared evolutionary footprints suggest mitochondrial oxidative damage underlies multiple complex I losses in fungi. | Open Biol | 2021 |
| 34909054 | Comparative genomic analysis of clinical <i>Candida glabrata</i> isolates identifies multiple polymorphic loci that can improve existing multilocus sequence typing strategy. | Stud Mycol | 2021 |
| 34749730 | The transposable element-rich genome of the cereal pest Sitophilus oryzae. | BMC Biol | 2021 |
| 34125917 | Human tRNAs with inosine 34 are essential to efficiently translate eukarya-specific low-complexity proteins. | Nucleic Acids Res | 2021 |
| 34201288 | Comparative Genomics Used to Predict Virulence Factors and Metabolic Genes among <i>Monilinia</i> Species. | J Fungi (Basel) | 2021 |
| 31560365 | EvolClust: automated inference of evolutionary conserved gene clusters in eukaryotes. | Bioinformatics | 2020 |
| 31702774 | Phylogenomics Identifies an Ancestral Burst of Gene Duplications Predating the Diversification of Aphidomorpha. | Mol Biol Evol | 2020 |
| 31833111 | Parental origin of the allotetraploid tobacco Nicotiana benthamiana. | Plant J | 2020 |
| 33100219 | Genomic evidence for recurrent genetic admixture during the domestication of Mediterranean olive trees (Olea europaea L.). | BMC Biol | 2020 |
| 32917281 | Correction to: The genome sequence of the grape phylloxera provides insights into the evolution, adaptation, and invasion routes of an iconic pest. | BMC Biol | 2020 |
| 32698880 | The genome sequence of the grape phylloxera provides insights into the evolution, adaptation, and invasion routes of an iconic pest. | BMC Biol | 2020 |
| 32720872 | Differential Expression of Fungal Genes Determines the Lifestyle of <i>Plectosphaerella</i> Strains During <i>Arabidopsis thaliana</i> Colonization. | Mol Plant Microbe Interact | 2020 |
| 32359152 | Selection following Gene Duplication Shapes Recent Genome Evolution in the Pea Aphid Acyrthosiphon pisum. | Mol Biol Evol | 2020 |
| 32269156 | Functional Characterization of Clinical Isolates of the Opportunistic Fungal Pathogen Aspergillus nidulans. | mSphere | 2020 |
| 31527797 | Evolutionary and functional patterns of shared gene neighbourhood in fungi. | Nat Microbiol | 2019 |
| 29370802 | Phylogenomics of the olive tree (Olea europaea) reveals the relative contribution of ancient allo- and autopolyploidization events. | BMC Biol | 2018 |
| 29884848 | Gene flow contributes to diversification of the major fungal pathogen Candida albicans. | Nat Commun | 2018 |
| 30478037 | Genetically encodable bioluminescent system from fungi. | Proc Natl Acad Sci U S A | 2018 |
| 29746697 | Adaptation of S. cerevisiae to Fermented Food Environments Reveals Remarkable Genome Plasticity and the Footprints of Domestication. | Mol Biol Evol | 2018 |
| 28951729 | Regulatory Mechanisms of a Highly Pectinolytic Mutant of <i>Penicillium occitanis</i> and Functional Analysis of a Candidate Gene in the Plant Pathogen <i>Fusarium oxysporum</i>. | Front Microbiol | 2017 |
| 24450712 | The complete mitochondrial DNA of the silky shark (Carcharhinus falciformis). | Mitochondrial DNA A DNA Mapp Seq Anal | 2016 |
| 27604469 | An expanded evaluation of protein function prediction methods shows an improvement in accuracy. | Genome Biol | 2016 |
| 27964752 | Extreme genomic erosion after recurrent demographic bottlenecks in the highly endangered Iberian lynx. | Genome Biol | 2016 |
| 28066338 | Widespread Inter- and Intra-Domain Horizontal Gene Transfer of d-Amino Acid Metabolism Enzymes in Eukaryotes. | Front Microbiol | 2016 |
| 27918580 | Correction: Gene Expansion Shapes Genome Architecture in the Human Pathogen Lichtheimia corymbifera: An Evolutionary Genomics Analysis in the Ancient Terrestrial Mucorales (Mucoromycotina). | PLoS Genet | 2016 |
| 27238284 | Expansion of Signal Transduction Pathways in Fungi by Extensive Genome Duplication. | Curr Biol | 2016 |
| 27493146 | Evolutionary genomics of yeast pathogens in the Saccharomycotina. | FEMS Yeast Res | 2016 |
| 27346392 | Genome sequence of the olive tree, Olea europaea. | Gigascience | 2016 |
| 26688468 | Horizontal acquisition of toxic alkaloid synthesis in a clade of plant associated fungi. | Fungal Genet Biol | 2016 |
| 26951068 | Whole genome sequencing of turbot (Scophthalmus maximus; Pleuronectiformes): a fish adapted to demersal life. | DNA Res | 2016 |
| 26729047 | Genome sequencing and secondary metabolism of the postharvest pathogen Penicillium griseofulvum. | BMC Genomics | 2016 |
| 24409907 | The complete mitochondrial genome of the Giant Manta ray, Manta birostris. | Mitochondrial DNA | 2015 |
| 26252497 | Beyond the Whole-Genome Duplication: Phylogenetic Evidence for an Ancient Interspecies Hybridization in the Baker's Yeast Lineage. | PLoS Biol | 2015 |
| 26483466 | Molecular signatures of plastic phenotypes in two eusocial insect species with simple societies. | Proc Natl Acad Sci U S A | 2015 |
| 26672008 | Contrasting Genomic Diversity in Two Closely Related Postharvest Pathogens: Penicillium digitatum and Penicillium expansum. | Genome Biol Evol | 2015 |
| 26133389 | Quest for Orthologs Entails Quest for Tree of Life: In Search of the Gene Stream. | Genome Biol Evol | 2015 |
| 26225486 | Corrigendum: Differential gene retention as an evolutionary mechanism to generate biodiversity and adaptation in yeasts. | Sci Rep | 2015 |
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| 24409908 | The complete mitogenome of the common dolphinfish (Coryphaena hippurus). | Mitochondrial DNA | 2015 |