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Author Details

Ezgi Karaca
Dokuz Eylul University
2008
36
18
Andrej Sali (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36270968Genetic complementation screening and molecular docking give new insight on phosphorylation-dependent Mastl kinase activation.J Biomol Struct Dyn2023
36270968Genetic complementation screening and molecular docking give new insight on phosphorylation-dependent Mastl kinase activation.J Biomol Struct Dyn2023
37872703Breaking the conformational ensemble barrier: Ensemble structure modeling challenges in CASP15.Proteins2023
37861057The impact of AI-based modeling on the accuracy of protein assembly prediction: Insights from CASP15.Proteins2023
37208392Rapid and efficient ambient temperature X-ray crystal structure determination at Turkish Light Source.Sci Rep2023
36936988PROT-ON: A structure-based detection of designer PROTein interface MutatiONs.Front Mol Biosci2023
37307148Molecular Mechanism of Nucleosome Recognition by the Pioneer Transcription Factor Sox.J Chem Inf Model2023
37503072The Impact of AI-Based Modeling on the Accuracy of Protein Assembly Prediction: Insights from CASP15.bioRxiv2023
36980177Differential Occupancy and Regulatory Interactions of KDM6A in Bladder Cell Lines.Cells2023
37861057The impact of AI-based modeling on the accuracy of protein assembly prediction: Insights from CASP15.Proteins2023
37503072The Impact of AI-Based Modeling on the Accuracy of Protein Assembly Prediction: Insights from CASP15.bioRxiv2023
37872703Breaking the conformational ensemble barrier: Ensemble structure modeling challenges in CASP15.Proteins2023
36980177Differential Occupancy and Regulatory Interactions of KDM6A in Bladder Cell Lines.Cells2023
37208392Rapid and efficient ambient temperature X-ray crystal structure determination at Turkish Light Source.Sci Rep2023
37307148Molecular Mechanism of Nucleosome Recognition by the Pioneer Transcription Factor Sox.J Chem Inf Model2023
36936988PROT-ON: A structure-based detection of designer PROTein interface MutatiONs.Front Mol Biosci2023
35335203Modeling the Dynamics of Protein-Protein Interfaces, How and Why?Molecules2022
36288101Enzymatic Generation of Double-Modified AdoMet Analogues and Their Application in Cascade Reactions with Different Methyltransferases.Chembiochem2022
35335203Modeling the Dynamics of Protein-Protein Interfaces, How and Why?Molecules2022
36288101Enzymatic Generation of Double-Modified AdoMet Analogues and Their Application in Cascade Reactions with Different Methyltransferases.Chembiochem2022
34195226Predicting the Specificity- Determining Positions of Receptor Tyrosine Kinase Axl.Front Mol Biosci2021
33490784How Far Are We from the Rapid Prediction of Drug Resistance Arising Due to Kinase Mutations?ACS Omega2021
34195226Predicting the Specificity- Determining Positions of Receptor Tyrosine Kinase Axl.Front Mol Biosci2021
34337786Assessment of the CASP14 assembly predictions.Proteins2021
33490784How Far Are We from the Rapid Prediction of Drug Resistance Arising Due to Kinase Mutations?ACS Omega2021
34337786Assessment of the CASP14 assembly predictions.Proteins2021
31388109Correction to: Novel mutations in KMT2B offer pathophysiological insights on childhood-onset progressive dystonia.J Hum Genet2019
31388109Correction to: Novel mutations in KMT2B offer pathophysiological insights on childhood-onset progressive dystonia.J Hum Genet2019
29551265Transposase-DNA Complex Structures Reveal Mechanisms for Conjugative Transposition of Antibiotic Resistance.Cell2018
29942005Defining distance restraints in HADDOCK.Nat Protoc2018
29551265Transposase-DNA Complex Structures Reveal Mechanisms for Conjugative Transposition of Antibiotic Resistance.Cell2018
29942005Defining distance restraints in HADDOCK.Nat Protoc2018
27802573Sense and simplicity in HADDOCK scoring: Lessons from CASP-CAPRI round 1.Proteins2017
28730688Sense and Simplicity in HADDOCK Scoring: Lessons from CASP-CAPRI (page 418).Proteins2017
28805795M3: an integrative framework for structure determination of molecular machines.Nat Methods2017
27802573Sense and simplicity in HADDOCK scoring: Lessons from CASP-CAPRI round 1.Proteins2017
28730688Sense and Simplicity in HADDOCK Scoring: Lessons from CASP-CAPRI (page 418).Proteins2017
28805795M3: an integrative framework for structure determination of molecular machines.Nat Methods2017
27122118Prediction of homoprotein and heteroprotein complexes by protein docking and template-based modeling: A CASP-CAPRI experiment.Proteins2016
27122118Prediction of homoprotein and heteroprotein complexes by protein docking and template-based modeling: A CASP-CAPRI experiment.Proteins2016
26410586The HADDOCK2.2 Web Server: User-Friendly Integrative Modeling of Biomolecular Complexes.J Mol Biol2016
28009253Structural snapshots of Xer recombination reveal activation by synaptic complex remodeling and DNA bending.Elife2016
26410586The HADDOCK2.2 Web Server: User-Friendly Integrative Modeling of Biomolecular Complexes.J Mol Biol2016
28009253Structural snapshots of Xer recombination reveal activation by synaptic complex remodeling and DNA bending.Elife2016
25330973Information-driven structural modelling of protein-protein interactions.Methods Mol Biol2015
25330973Information-driven structural modelling of protein-protein interactions.Methods Mol Biol2015
26257172Exome Sequence Analysis Suggests that Genetic Burden Contributes to Phenotypic Variability and Complex Neuropathy.Cell Rep2015
26257172Exome Sequence Analysis Suggests that Genetic Burden Contributes to Phenotypic Variability and Complex Neuropathy.Cell Rep2015
24155158Blind prediction of interfacial water positions in CAPRI.Proteins2014
24155158Blind prediction of interfacial water positions in CAPRI.Proteins2014
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Collaborators

Alexandre M J J Bonvin
Bijvoet Center for Biomolecular Research, Utrecht University
Co-authored papers 16
Jo??o P G L M Rodrigues
Stanford University
Co-authored papers 11
Panagiotis L Kastritis
Interdisciplinary Research Center HALOmem, Martin Luther University Halle-Wittenberg
Co-authored papers 10
Adrien S J Melquiond
Oncode Institute & Hubrecht Institute-KNAW and University Medical Center Utrecht
Co-authored papers 9
Marc van Dijk
Co-authored papers 6
Gydo C P van Zundert
Utrecht University
Co-authored papers 5
Andriy Kryshtafovych
University of California davis
Co-authored papers 5
Mikael Trellet
Co-authored papers 5
Christophe Schmitz
Co-authored papers 4
Li C Xue
Utrecht University
Co-authored papers 3
Turkan Haliloglu
Co-authored papers 3
Ruth Nussinov
Sackler School of Medicine, Tel Aviv University
Co-authored papers 3
Koen Visscher
Inscopix Inc.
Co-authored papers 3
Mehdi Nellen
Utrecht University
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Anna Vangone
Roche Pharma Research and Early Development
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Zhiping Weng
University of Massachusetts Medical School
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Hasup Lee
Seoul National University
Co-authored papers 2
Jeffrey J Gray
Johns Hopkins University
Co-authored papers 2
Chiara Pallara
Co-authored papers 2
Sheng-You Huang
Huazhong University of Science and Technology
Co-authored papers 2
Huan-Xiang Zhou
University of Illinois Chicago
Co-authored papers 2
Brian G Pierce
University of Maryland Institute for Bioscience and Biotechnology Research
Co-authored papers 2
Thom Vreven
Visterra Inc.
Co-authored papers 2
Xiaoqin Zou
Dalton Cardiovascular Research Center, University of Missouri
Co-authored papers 2
Ilya A Vakser
The University of Kansas
Co-authored papers 2
Brian Jim??nez-Garc??a
Utrecht University
Co-authored papers 2
Iain H Moal
GSK Medicines Research Centre
Co-authored papers 2
Cunliang Geng
Co-authored papers 2
Petras J Kundrotas
The University of Kansas
Co-authored papers 2
Shoshana J Wodak
VIB-VUB Center for Structural Biology
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Release 1.2