Author details

Full Name

Ingo Ruczinski

Affiliation

ORCID

Career Start Year

1999

Papers

181

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
37531325	Novel bioinformatic methods and machine learning approaches reveal candidate biomarkers of the intensity and timing of past exposure to Plasmodium falciparum.	PLOS Glob Public Health	2023
36403663	Epidermal differentiation complex genetic variation in atopic dermatitis and peanut allergy.	J Allergy Clin Immunol	2023
37744365	Comprehensive profiling of pre-infection antibodies identifies HIV targets associated with viremic control and viral load.	Front Immunol	2023
37577562	Efficient encoding of large antigenic spaces by epitope prioritization with Dolphyn.	bioRxiv	2023
36778386	Structural variation across 138,134 samples in the TOPMed consortium.	Res Sq	2023
36872556	A Bayesian hierarchical model for signal extraction from protein microarrays.	Stat Med	2023
36747810	Structural variation across 138,134 samples in the TOPMed consortium.	bioRxiv	2023
34668656	A pre-processing pipeline to quantify, visualize, and reduce technical variation in protein microarray studies.	Proteomics	2022
36109689	Detecting antibody reactivities in Phage ImmunoPrecipitation Sequencing data.	BMC Genomics	2022
36368950	Evaluation of multi-assay algorithms for cross-sectional HIV incidence estimation in settings with universal antiretroviral treatment.	BMC Infect Dis	2022
35959988	Detecting and quantifying antibody reactivity in PhIP-Seq data with BEER.	Bioinformatics	2022
35649416	Phage display of environmental protein toxins and virulence factors reveals the prevalence, persistence, and genetics of antibody responses.	Immunity	2022
35385699	Polygenic transcriptome risk scores for COPD and lung function improve cross-ethnic portability of prediction in the NHLBI TOPMed program.	Am J Hum Genet	2022
36466872	HLA-associated outcomes in peanut oral immunotherapy trials identify mechanistic and clinical determinants of therapeutic success.	Front Immunol	2022
35312098	Secondary analyses for genome-wide association studies using expression quantitative trait loci.	Genetic Epidemiology	2022
34981778	HLA alleles and sustained peanut consumption promote IgG4 responses in subjects protected from peanut allergy.	J Clin Invest	2022
34536413	Multiethnic genome-wide and HLA association study of total serum IgE level.	J Allergy Clin Immunol	2021
34242216	Pleiotropy method reveals genetic overlap between orofacial clefts at multiple novel loci from GWAS of multi-ethnic trios.	PLoS Genet	2021
33571169	Antibody responses to endemic coronaviruses modulate COVID-19 convalescent plasma functionality.	J Clin Invest	2021
33937227	Detecting Gene-Environment Interaction for Maternal Exposures Using Case-Parent Trios Ascertained Through a Case With Non-Syndromic Orofacial Cleft.	Front Cell Dev Biol	2021
33660319	A top scoring pairs classifier for recent HIV infections.	Stat Med	2021
34321601	Impact of Amerind ancestry and FADS genetic variation on omega-3 deficiency and cardiometabolic traits in Hispanic populations.	Commun Biol	2021
33548076	Whole genome sequencing identifies novel genetic mutations in patients with eczema herpeticum.	Allergy	2021
33094331	Transcriptional profile of platelets and iPSC-derived megakaryocytes from whole-genome and RNA sequencing.	Blood	2021
34512672	HIV Antibody Profiles in HIV Controllers and Persons With Treatment-Induced Viral Suppression.	Front Immunol	2021
33057025	Whole genome sequence analysis of pulmonary function and COPD in 19,996 multi-ethnic participants.	Nat Commun	2020
32167131	Prospective clinical trial examining the impact of genetic variation in FADS1 on the metabolism of linoleic acid- and É£-linolenic acid-containing botanical oils.	American Journal of Clinical Nutrition	2020
31713269	A flexible and nearly optimal sequential testing approach to randomized testing: QUICK-STOP.	Genet Epidemiol	2020
31981624	Association of HLA-DRB1â¿¿09:01 with tIgE levels among African-ancestry individuals with asthma.	J Allergy Clin Immunol	2020
32442913	Genomic integrity of human induced pluripotent stem cells across nine studies in the NHLBI NextGen program.	Stem Cell Res	2020
33354688	Antibody responses to endemic coronaviruses modulate COVID-19 convalescent plasma functionality.	medRxiv	2020
32574564	Genome-wide Enrichment of De Novo Coding Mutations in Orofacial Cleft Trios.	Am J Hum Genet	2020
32894098	Bayesian copy number detection and association in large-scale studies.	BMC Cancer	2020
32839289	Protective effect of club cell secretory protein (CC-16) on COPD risk and progression: a Mendelian randomisation study.	Thorax	2020
30825465	The MALT1 locus and peanut avoidance in the risk for peanut allergy.	J Allergy Clin Immunol	2019
31710793	COPDGene<sup>Â®</sup> 2019: Redefining the Diagnosis of Chronic Obstructive Pulmonary Disease.	Chronic Obstr Pulm Dis	2019
30455414	Assembly of a pan-genome from deep sequencing of 910 humans of African descent.	Nat Genet	2019
30500888	Detection of rare disease variants in extended pedigrees using RVS.		2019
30246882	Inferring disease risk genes from sequencing data in multiplex pedigrees through sharing of rare variants.	Genet Epidemiol	2019
30084993	Detection of de novo copy number deletions from targeted sequencing of trios.	Bioinformatics	2019
30610941	Genome-wide association study in two populations to determine genetic variants associated with Toxoplasma gondii infection and relationship to schizophrenia risk.	Prog Neuropsychopharmacol Biol Psychiatry	2019
29553866	Targeted deep sequencing of the PEAR1 locus for platelet aggregation in European and African American families.	Platelets	2019
31042470	Comprehensive Profiling of HIV Antibody Evolution.	Cell Rep	2019
30694373	Identification of interactions of binary variables associated with survival time using survivalFS.	Archives of Toxicology	2019
31443688	Replicated methylation changes associated with eczema herpeticum and allergic response.	Clin Epigenetics	2019
30942856	Evolution of Hominin Polyunsaturated Fatty Acid Metabolism: From Africa to the New World.	Genome Biology and Evolution	2019
29631575	The genetics of smoking in individuals with chronic obstructive pulmonary disease.	Respir Res	2018
30060175	Whole exome sequencing analysis in severe chronic obstructive pulmonary disease.	Hum Mol Genet	2018
29574260	HLA typing using genome wide data reveals susceptibility types for infections in a psychiatric disease enriched sample.	Brain Behav Immun	2018
29762754	Optimized distributed systems achieve significant performance improvement on sorted merging of massive VCF files.	Gigascience	2018