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Author Details

Daniel Petras
2009
77
29
PMIDPaper TitleJournal TitlePublished Year
36920561Mass spectrometry DDA parameters and global coverage of the metabolome: Spectral molecular networks of momordica cardiospermoides plants.2023
38030603Resurrecting ancestral antibiotics: unveiling the origins of modern lipid II targeting glycopeptides.2023
37653089Microbiomes and metabolomes of dominant coral reef primary producers illustrate a potential role for immunolipids in marine symbioses.2023
37652904Portosystemic shunt placement reveals blood signatures for the development of hepatic encephalopathy through mass spectrometry.Nat Commun2023
37578818Evaluation of Data-Dependent MS/MS Acquisition Parameters for Non-Targeted Metabolomics and Molecular Networking of Environmental Samples: Focus on the Q Exactive Platform.2023
37577622A Taxonomically-informed Mass Spectrometry Search Tool for Microbial Metabolomics Data.Res Sq2023
37857709Progress and challenges in exploring aquatic microbial communities using non-targeted metabolomics.2023
36521429Spatial Venomicsâ¿¿Cobra Venom System Reveals Spatial Differentiation of Snake Toxins by Mass Spectrometry Imaging.2023
36711444Pre- and Post-Portosystemic Shunt Placement Metabolomics Reveal Molecular Signatures for the Development of Hepatic Encephalopathy.medRxiv2023
36862087Bacterial and Chemical Evidence of Coastal Water Pollution from the Tijuana River in Sea Spray Aerosol.Environ Sci Technol2023
36859716Integrative analysis of multimodal mass spectrometry data in MZmine 3.Nat Biotechnol2023
35101918Distinguishing the molecular diversity, nutrient content, and energetic potential of exometabolomes produced by macroalgae and reef-building corals.Proceedings of the National Academy of Sciences of the United States of America2022
35834352Mass Difference Matching Unfolds Hidden Molecular Structures of Dissolved Organic Matter.Environmental Science & Technology2022
35763461Isotopic Insights into Organic Composition Differences between Supermicron and Submicron Sea Spray Aerosol.Environmental Science & Technology2022
36222155Illuminating the dark metabolome of Pseudo-nitzschia-microbiome associations.Environmental Microbiology2022
35941113Native metabolomics identifies the rivulariapeptolide family of protease inhibitors.Nat Commun2022
35482131Listeria monocytogenes exposed to antimicrobial peptides displays differential regulation of lipids and proteins associated to stress response.Cellular and Molecular Life Sciences2022
35668112Bacillus subtilis biofilm matrix components target seed oil bodies to promote growth and anti-fungal resistance in melon.Nature Microbiology2022
36557313ConCISE: Consensus Annotation Propagation of Ion Features in Untargeted Tandem Mass Spectrometry Combining Molecular Networking and Metabolite Structure Prediction.2022
35048927The Sea Spray Chemistry and Particle Evolution study (SeaSCAPE): overview and experimental methods.Environmental Sciences: Processes and Impacts2022
34862502GNPS Dashboard: collaborative exploration of mass spectrometry data in the web browser.Nat Methods2022
34795435Native mass spectrometry-based metabolomics identifies metal-binding compounds.Nature Chemistry2022
34533933Chemical Proportionality within Molecular Networks.Anal Chem2021
33589842A community resource for paired genomic and metabolomic data mining.Nat Chem Biol2021
33479150Convergent evolution of pain-inducing defensive venom components in spitting cobras.Science2021
33532571Multiomics Analysis Provides Insight into the Laboratory Evolution of Escherichia coli toward the Metabolic Usage of Fluorinated Indoles.ACS Cent Sci2021
34158495Ion identity molecular networking for mass spectrometry-based metabolomics in the GNPS environment.Nature Communications2021
33460888Non-targeted tandem mass spectrometry enables the visualization of organic matter chemotype shifts in coastal seawater.2021
34202973A Metabolic Choreography of Maize Plants Treated with a Humic Substance-Based Biostimulant under Normal and Starved Conditions.Metabolites2021
34342533Chemical Gradients of Plant Substrates in an <i>Atta texana</i> Fungus Garden.mSystems2021
34320359Chemical interplay and complementary adaptative strategies toggle bacterial antagonism and co-existence.Cell Reports2021
33230292Systematic classification of unknown metabolites using high-resolution fragmentation mass spectra.Nat Biotechnol2021
33169034Auto-deconvolution and molecular networking of gas chromatography-mass spectrometry data.Nat Biotechnol2021
35049876The Diversity, Metabolomics Profiling, and the Pharmacological Potential of Actinomycetes Isolated from the Estremadura Spur Pockmarks (Portugal).Marine Drugs2021
34853318Siderophore-mediated zinc acquisition enhances enterobacterial colonization of the inflamed gut.Nat Commun2021
34606723Combined Molecular and Elemental Mass Spectrometry Approaches for Absolute Quantification of Proteomes: Application to the Venomics Characterization of the Two Species of Desert Black Cobras, and .Journal of Proteome Research2021
34822421Metabolomics and Molecular Networking to Characterize the Chemical Space of Four Plant Species.Metabolites2021
35004707Organic Matter Composition at Ocean Station Papa Affects Its Bioavailability, Bacterioplankton Growth Efficiency and the Responding Taxa.Frontiers in Marine Science2021
32839597Feature-based molecular networking in the GNPS analysis environment.Nat Methods2020
31894142Mass spectrometry searches using MASST.Nat Biotechnol2020
32405051Reproducible molecular networking of untargeted mass spectrometry data using GNPS.Nat Protoc2020
32807955ReDU: a framework to find and reanalyze public mass spectrometry data.Nat Methods2020
33184402Fungal-bacterial interaction selects for quorum sensing mutants with increased production of natural antifungal compounds.Communications Biology2020
31341288Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2.Nat Biotechnol2019
31772017Solenodon genome reveals convergent evolution of venom in eulipotyphlan mammals.Proc Natl Acad Sci U S A2019
32550573The emerging field of venom-microbiomics for exploring venom as a microenvironment, and the corresponding Initiative for Venom Associated Microbes and Parasites (iVAMP).Toxicon: X2019
30763806Intact protein mass spectrometry reveals intraspecies variations in venom composition of a local population of Vipera kaznakovi in Northeastern Turkey.Journal of Proteomics2019
31015472The extracellular matrix protects Bacillus subtilis colonies from Pseudomonas invasion and modulates plant co-colonization.Nature Communications2019
31399723Author Correction: Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2.Nat Biotechnol2019
29361220Tundrenone: An Atypical Secondary Metabolite from Bacteria with Highly Restricted Primary Metabolism.J Am Chem Soc2018
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