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Author Details

Oren S Rosenberg
University of California san francisco
2003
45
22
Trey Ideker (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36805129Computational pipeline provides mechanistic understanding of Omicron variant of concern neutralizing engineered ACE2 receptor traps.Structure2023
37803001Systematic functional interrogation of SARS-CoV-2 host factors using Perturb-seq.Nat Commun2023
37788505Evaluating the Performance of Pathogen-Targeted Positron Emission Tomography Radiotracers in a Rat Model of Vertebral Discitis-Osteomyelitis.J Infect Dis2023
37535945Chemoenzymatic Syntheses of Fluorine-18-Labeled Disaccharides from [<sup>18</sup>F] FDG Yield Potent Sensors of Living Bacteria <i>In Vivo</i>.J Am Chem Soc2023
37293043Chemoenzymatic syntheses of fluorine-18-labeled disaccharides from [ <sup>18</sup> F]FDG yield potent sensors of living bacteria <i>in vivo</i>.bioRxiv2023
36782050Structure and dynamics of the essential endogenous mycobacterial polyketide synthase Pks13.Nat Struct Mol Biol2023
36747776Structure and dynamics of the essential endogenous mycobacterial polyketide synthase Pks13.bioRxiv2023
35982665Computational pipeline provides mechanistic understanding of Omicron variant of concern neutralizing engineered ACE2 receptor traps.bioRxiv2022
35732972Imaging joint infections using D-methyl-<sup>11</sup>C-methionine PET/MRI: initial experience in humans.Eur J Nucl Med Mol Imaging2022
35731824Cbp1, a fungal virulence factor under positive selection, forms an effector complex that drives macrophage lysis.PLoS Pathog2022
35730550Workshop-based learning and networking: a scalable model for research capacity strengthening in low- and middle-income countries.Glob Health Action2022
35471042Leaks in the Pipeline: a Failure Analysis of Gram-Negative Antibiotic Development from 2010 to 2020.Antimicrob Agents Chemother2022
35594991Discovery Proteomics Analysis Determines That Driver Oncogenes Suppress Antiviral Defense Pathways Through Reduction in Interferon-β Autocrine Stimulation.Mol Cell Proteomics2022
34031651CryoEM and AI reveal a structure of SARS-CoV-2 Nsp2, a multifunctional protein involved in key host processes.Res Sq2021
33637588Cyclic <sup>68</sup>Ga-Labeled Peptides for Specific Detection of Human Angiotensin-Converting Enzyme 2.J Nucl Med2021
34013269CryoEM and AI reveal a structure of SARS-CoV-2 Nsp2, a multifunctional protein involved in key host processes.bioRxiv2021
32222086Arabinofuranose-derived positron-emission tomography radiotracers for detection of pathogenic microorganisms.J Labelled Comp Radiopharm2020
31697062High Enantiomeric Excess In-Loop Synthesis of d-[methyl-<sup>11</sup>C]Methionine for Use as a Diagnostic Positron Emission Tomography Radiotracer in Bacterial Infection.ACS Infect Dis2020
33060197Comparative host-coronavirus protein interaction networks reveal pan-viral disease mechanisms.Science2020
33093202Engineered ACE2 receptor traps potently neutralize SARS-CoV-2.Proc Natl Acad Sci U S A2020
32766586Engineered ACE2 receptor traps potently neutralize SARS-CoV-2.bioRxiv2020
32764120Nuclear Imaging of Bacterial Infection: The State of the Art and Future Directions.J Nucl Med2020
32123733Sensing Living Bacteria <i>in Vivo</i> Using d-Alanine-Derived <sup>11</sup>C Radiotracers.ACS Cent Sci2020
32353859A SARS-CoV-2 protein interaction map reveals targets for drug repurposing.Nature2020
32433879Small Molecule Sensors Targeting the Bacterial Cell Wall.ACS Infect Dis2020
31073154Controlling CRISPR-Cas9 with ligand-activated and ligand-deactivated sgRNAs.Nat Commun2019
31886769The structure of the endogenous ESX-3 secretion system.Elife2019
31239378Two Accessory Proteins Govern MmpL3 Mycolic Acid Transport in Mycobacteria.mBio2019
31481541Modulating Pathogenesis with Mobile-CRISPRi.J Bacteriol2019
29712422[<sup>11</sup>C]Para-Aminobenzoic Acid: A Positron Emission Tomography Tracer Targeting Bacteria-Specific Metabolism.ACS Infect Dis2018
29405697Detection of Bacteria-Specific Metabolism Using Hyperpolarized [2-<sup>13</sup>C]Pyruvate.ACS Infect Dis2018
27576770High School Physical Education Requirements and Youth Body Weight: New Evidence from the YRBS.Health Econ2017
28252385<i>Chlamydia</i> interfere with an interaction between the mannose-6-phosphate receptor and sorting nexins to counteract host restriction.Elife2017
28801560Imaging Active Infection in vivo Using D-Amino Acid Derived PET Radiotracers.Sci Rep2017
25865481Substrates Control Multimerization and Activation of the Multi-Domain ATPase Motor of Type VII Secretion.Cell2015
26118995Global Mapping of the Inc-Human Interactome Reveals that Retromer Restricts Chlamydia Infection.Cell Host Microbe2015
24681967The crystal structure of S. cerevisiae Sad1, a catalytically inactive deubiquitinase that is broadly required for pre-mRNA splicing.RNA2014
24994900Structure of a new DNA-binding domain which regulates pathogenesis in a wide variety of fungi.Proc Natl Acad Sci U S A2014
23324760Immune reconstitution reactions in human immunodeficiency virus-negative patients: report of a case and review of the literature.JAMA Dermatol2013
21884935A mechanism for tunable autoinhibition in the structure of a human Ca2+/calmodulin- dependent kinase II holoenzyme.Cell2011
21795602EspR, a key regulator of Mycobacterium tuberculosis virulence, adopts a unique dimeric structure among helix-turn-helix proteins.Proc Natl Acad Sci U S A2011
16441656Oligomerization states of the association domain and the holoenyzme of Ca2+/CaM kinase II.FEBS J2006
16325579Structure of the autoinhibited kinase domain of CaMKII and SAXS analysis of the holoenzyme.Cell2005
12552431Treatment history and treatment dose are important determinants of sulfadoxine-pyrimethamine efficacy in children with uncomplicated malaria in Western Kenya.J Infect Dis2003
12936996Sulfadoxine-pyrimethamine in treatment of malaria in Western Kenya: increasing resistance and underdosing.Antimicrob Agents Chemother2003
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Collaborators

Nevan J Krogan (CM4AI)
University of California San Francisco
Co-authored papers 10
Tanja Kortemme
University of California san francisco
Co-authored papers 10
Robert M Stroud
University of California San Francisco
Co-authored papers 8
Kliment A Verba
University of California, University of California San Francisco
Co-authored papers 6
James S Fraser
University of California san francisco
Co-authored papers 6
Gregory E Merz
University of California san francisco
Co-authored papers 5
Gwendolyn M Jang
Gladstone Institute of Data Science and Biotechnology, J. David Gladstone Institutes
Co-authored papers 5
Alexandrea N Rizo
University of California san francisco
Co-authored papers 5
Javier E Villanueva-Meyer
University of California san francisco
Co-authored papers 5
Jeffery S Cox
University of California berkeley
Co-authored papers 5
Sergei Pourmal
University of California san francisco
Co-authored papers 5
Un Seng Chio
University of California san francisco
Co-authored papers 5
Komal Ishwar Pawar
University of California san francisco
Co-authored papers 5
Miles Sasha Dickinson
University of Washington
Co-authored papers 5
Amber M Smith
University of California san francisco
Co-authored papers 5
Axel F Brilot
University of California san francisco
Co-authored papers 5
Janet Finer-Moore
University of California San Francisco
Co-authored papers 5
Fengbo Zhou
Washington University School of Medicine
Co-authored papers 5
Nadia Herrera
University of California san francisco
Co-authored papers 5
Andrej Sali (CM4AI)
University of California San Francisco
Co-authored papers 4
Danielle L Swaney
J. David Gladstone Institutes
Co-authored papers 4
Amy Diallo
University of California san francisco
Co-authored papers 4
Raphael Trenker
Cardiovascular Research Institute, University of California San Francisco
Co-authored papers 4
Jocelyne Lopez
University of California san francisco
Co-authored papers 4
Yifan Cheng
Quantitative Bioscience Institute, University of California san francisco
Co-authored papers 4
Irene Lui
Department of Pharmaceutical Chemistry, University of California san francisco
Co-authored papers 4
Nadine Czudnochowski
University of California san francisco
Co-authored papers 4
Robyn M Kaake
J. David Gladstone Institutes
Co-authored papers 4
Soumya G Remesh
Department of Pharmaceutical Chemistry, University of California san francisco
Co-authored papers 4
David A Agard
University of California, USA Quantitative Biosciences Institute (QBI) san francisco
Co-authored papers 4
Release 1.2