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Author Details

David Tse
Stanford University
2013
19
11
Nevan J Krogan (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
37961606OASIS: An interpretable, finite-sample valid alternative to Pearson's <mml:math xmlns:mml="http://www.w3.org/1998/Math/MathML"><mml:msup><mml:mrow><mml:mi>X</mml:mi></mml:mrow><mml:mrow><mml:mn>2</mml:mn></mml:mrow></mml:msup></mml:math> for scientific discovery.bioRxiv2023
32484809RefShannon: A genome-guided transcriptome assembler using sparse flow decomposition.PLoS One2020
32034137Determining sequencing depth in a single-cell RNA-seq experiment.Nat Commun2020
33205128Spectral Jaccard Similarity: A New Approach to Estimating Pairwise Sequence Alignments.Patterns (N Y)2020
31142858Longitudinal multi-omics of host-microbe dynamics in prediabetes.Nature2019
31359007Large dataset enables prediction of repair after CRISPR-Cas9 editing in primary T cells.Nat Biotechnol2019
31521605Valid Post-clustering Differential Analysis for Single-Cell RNA-Seq.Cell Syst2019
31042711Somatic mutations render human exome and pathogen DNA more similar.PLoS One2019
29523077An interpretable framework for clustering single-cell RNA-Seq datasets.BMC Bioinformatics2018
29422526Optimal compressed representation of high throughput sequence data via light assembly.Nat Commun2018
29700301Publisher Correction: Optimal compressed representation of high throughput sequence data via light assembly.Nat Commun2018
28025204Novel probabilistic models of spatial genetic ancestry with applications to stratification correction in genome-wide association studies.Bioinformatics2017
28320918HINGE: long-read assembly achieves optimal repeat resolution.Genome Res2017
27230763Fast and accurate single-cell RNA-seq analysis by clustering of transcript-compatibility counts.Genome Biol2016
27587667Information-optimal genome assembly via sparse read-overlap graphs.Bioinformatics2016
26040454FinisherSC: a repeat-aware tool for upgrading de novo assembly using long reads.Bioinformatics2015
27135798Fundamental Limits of Search.Cell Syst2015
25252708Near-optimal assembly for shotgun sequencing with noisy reads.BMC Bioinformatics2014
23902516Optimal assembly for high throughput shotgun sequencing.BMC Bioinformatics2013
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Collaborators

Suleyman Cenk Sahinalp
National Cancer Institute, National Institutes of Health
Co-authored papers 2
Kaiyuan Zhu
Zhejiang Institute of Landscape Plants and Flowers
Co-authored papers 2
Lior Pachter
Co-authored papers 2
Ibrahim Numanagi??
University of Victoria
Co-authored papers 2
Eric Shifrut
Gladstone-UCSF Institute of Genomic Immunology
Co-authored papers 1
Sophia Miryam Schüssler-Fiorenza Rose
Co-authored papers 1
K??vin Contrepois
Stanford University School of Medicine
Co-authored papers 1
Nevan J Krogan (CM4AI)
University of California San Francisco
Co-authored papers 1
Ryan T Leenay
North Carolina State University
Co-authored papers 1
Hera Canaj
Co-authored papers 1
James Zou
Stanford University
Co-authored papers 1
Judd F Hultquist
Northwestern University Feinberg School of Medicine
Co-authored papers 1
Alexander Marson
Gladstone-UCSF Institute of Genomic Immunology
Co-authored papers 1
Kimberly R Kukurba
Co-authored papers 1
George M Weinstock
The Genome Center at Washington University, Washington University School of Medicine
Co-authored papers 1
Ryan Apathy
University of California san francisco
Co-authored papers 1
Theodore L Roth
Stanford University
Co-authored papers 1
Erica Sodergren
The Genome Institute at Washington University
Co-authored papers 1
Joseph B Hiatt
Fred Hutchinson Cancer Center
Co-authored papers 1
Michael Snyder
Stanford University
Co-authored papers 1
Giana Cirolia
Co-authored papers 1
Manuel D Leonetti
University of California, USA Howard Hughes Medical Institute san francisco
Co-authored papers 1
Andrew P May
Fluidigm Corporation
Co-authored papers 1
Zhenqin Wu
Stanford University
Co-authored papers 1
Amirali Aghazadeh
University of California berkeley
Co-authored papers 1
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