Skip to Main Content

Author Details

Irwin Jungreis
Broad Institute of MIT and Harvard
2010
37
28
Kirsten Obernier (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36420896GENCODE: reference annotation for the human and mouse genomes in 2023.Nucleic Acids Res2023
37738970SARS-CoV-2 variants evolve convergent strategies to remodel the host response.Cell2023
34663921Unannotated proteins expand the MHC-I-restricted immunopeptidome in cancer.Nat Biotechnol2022
35831657Standardized annotation of translated open reading frames.Nat Biotechnol2022
34942634Evolution of enhanced innate immune evasion by SARS-CoV-2.Nature2022
35332335Publisher Correction: Evolution of enhanced innate immune evasion by SARS-CoV-2.Nature2022
32946576Genus-Wide Characterization of Bumblebee Genomes Provides Insights into Their Evolution and Variation in Ecological and Behavioral Traits.Mol Biol Evol2021
33774510Conflicting and ambiguous names of overlapping ORFs in the SARS-CoV-2 genome: A homology-based resolution.Virology2021
34015138Erratum to: Genus-wide characterization of bumblebee genomes provides insights into their evolution and variation in ecological and behavioral traits.Mol Biol Evol2021
34064175Calcifediol Treatment and Hospital Mortality Due to COVID-19: A Cohort Study.Nutrients2021
33976134SARS-CoV-2 gene content and COVID-19 mutation impact by comparing 44 Sarbecovirus genomes.Nat Commun2021
33270111GENCODE 2021.Nucleic Acids Res2021
32138667Evidence for a novel overlapping coding sequence in POLG initiated at a CUG start codon.BMC Genet2020
31886458Few SINEs of life: Alu elements have little evidence for biological relevance despite elevated translation.NAR Genom Bioinform2020
33024961SARS-CoV-2 gene content and COVID-19 mutation impact by comparing 44 Sarbecovirus genomes.Res Sq2020
33290746Genomic RNA Elements Drive Phase Separation of the SARS-CoV-2 Nucleocapsid.Mol Cell2020
32577641SARS-CoV-2 gene content and COVID-19 mutation impact by comparing 44 Sarbecovirus genomes.bioRxiv2020
32710835Translation Initiation Site Profiling Reveals Widespread Synthesis of Non-AUG-Initiated Protein Isoforms in Yeast.Cell Syst2020
32587965Specific viral RNA drives the SARS CoV-2 nucleocapsid to phase separate.bioRxiv2020
30357393GENCODE reference annotation for the human and mouse genomes.Nucleic Acids Res2019
31537640Discovery of high-confidence human protein-coding genes and exons by whole-genome PhyloCSF helps elucidate 118 GWAS loci.Genome Res2019
31220870Elucidation of Codon Usage Signatures across the Domains of Life.Mol Biol Evol2019
30923056A gene expression atlas of embryonic neurogenesis in <i>Drosophila</i> reveals complex spatiotemporal regulation of lncRNAs.Development2019
29386352Stop codon readthrough generates a C-terminally extended variant of the human vitamin D receptor with reduced calcitriol response.J Biol Chem2018
30395326Corrigendum: Loose ends: almost one in five human genes still have unresolved coding status.Nucleic Acids Res2018
27010111Improved Identification and Analysis of Small Open Reading Frame Encoded Polypeptides.Anal Chem2016
27604222Evolutionary Dynamics of Abundant Stop Codon Readthrough.Mol Biol Evol2016
25554792Mosquito genomics. Highly evolvable malaria vectors: the genomes of 16 Anopheles mosquitoes.Science2015
26091036Ebola Virus Epidemiology, Transmission, and Evolution during Seven Months in Sierra Leone.Cell2015
25853568FRESCo: finding regions of excess synonymous constraint in diverse viruses.Genome Biol2015
24490786Discovery of human sORF-encoded polypeptides (SEPs) in cell lines and tissue.J Proteome Res2014
25013167Evidence of efficient stop codon readthrough in four mammalian genes.Nucleic Acids Res2014
23544069Heterologous stop codon readthrough of metazoan readthrough candidates in yeast.PLoS One2013
21685081PhyloCSF: a comparative genomics method to distinguish protein coding and non-coding regions.Bioinformatics2011
21994247Evidence of abundant stop codon readthrough in Drosophila and other metazoa.Genome Res2011
21993624A high-resolution map of human evolutionary constraint using 29 mammals.Nature2011
21177974Identification of functional elements and regulatory circuits by Drosophila modENCODE.Science2010
  • 1 - 37 of 37

Recommended Authors

Claire D McWhite
Lewis-Sigler Institute for Integrative Genomics, Princeton University
Career Start Year 2012
Number of shared co-authors 1
Xabier Bello
Instituto de Investigacion Sanitaria de Santiago
Career Start Year 2009
Number of shared co-authors 3
Kristen K Dang
Benaroya Research Institute at Virginia Mason
Career Start Year 2006
Number of shared co-authors 3
Paolo Ribeca
The James Hutton Institute
Career Start Year 2006
Number of shared co-authors 11
Milana Frenkel-Morgenstern
Bar-Ilan University
Career Start Year 2005
Number of shared co-authors 1
Vladimir Vacic
Stanley Institute for Cognitive Genomics
Career Start Year 2005
Number of shared co-authors 2
Jeffrey A Rosenfeld
Cancer Institute of New Jersey
Career Start Year 2004
Number of shared co-authors 7
Chung-Chau Hon
RIKEN center for Integrative Medical Sciences, Hiroshima University
Career Start Year 2003
Number of shared co-authors 2
Lachlan J M Coin
The Peter Doherty Institute for Infection and Immunity, The University of Melbourne
Career Start Year 2003
Number of shared co-authors 3
Harm van Bakel
Icahn School of Medicine at Mount Sinai
Career Start Year 2002
Number of shared co-authors 20
Timo Lassmann
Telethon Kids Institute, University of Western Australia
Career Start Year 2002
Number of shared co-authors 10
Martin C Frith
Artificial Intelligence Research Center, University of Tokyo
Career Start Year 2001
Number of shared co-authors 3
Tyler Alioto
Universitat de Barcelona (UB)
Career Start Year 2001
Number of shared co-authors 39
Jun Yu
Beijing Institute of Genomics, Chinese Academy of Sciences
Career Start Year 2001
Number of shared co-authors 27
Ian Korf
University of California davis
Career Start Year 1998
Number of shared co-authors 29
Anton Nekrutenko
The Pennsylvania State University, University Park
Career Start Year 1998
Number of shared co-authors 22
David R Powell
Biomedicine Discovery Institute, Monash University
Career Start Year 1998
Number of shared co-authors 0
Debora S Marks
Blavatnik Institute, Harvard Medical School
Career Start Year 1995
Number of shared co-authors 3
Evgeny M Zdobnov
University of Geneva Medical School
Career Start Year 1995
Number of shared co-authors 50
Terry Gaasterland
Scripps Institution of Oceanography, University of California San Diego
Career Start Year 1994
Number of shared co-authors 18
Mark Yandell
University of Utah
Career Start Year 1994
Number of shared co-authors 38
Joseph L DeRisi
University of California San Francisco
Career Start Year 1994
Number of shared co-authors 14
Steven L Salzberg
Center for Computational Biology, Johns Hopkins University
Career Start Year 1992
Number of shared co-authors 40
Arcady Mushegian
National Science Foundation
Career Start Year 1991
Number of shared co-authors 14
Chris P Ponting
The University of Edinburgh
Career Start Year 1989
Number of shared co-authors 46
Peer Bork
University of Wurzburg
Career Start Year 1989
Number of shared co-authors 53
Mark D Adams
Case Western Reserve University School of Medicine
Career Start Year 1989
Number of shared co-authors 27
John M Hancock
the University of Texas Health Science Center at Houston
Career Start Year 1982
Number of shared co-authors 5
Richard Durbin
University of Cambridge
Career Start Year 1964
Number of shared co-authors 45
John S Mattick
Australia UNSW RNA Institute
Career Start Year 1951
Number of shared co-authors 27

Collaborators

Manolis Kellis
Massachusetts Institute of Technology
Co-authored papers 34
Michael F Lin
mlin.net LLC
Co-authored papers 7
Benedict Paten
UC Santa Cruz Genomics Institute, University of California
Co-authored papers 5
Paul Flicek
European Bioinformatics Institute
Co-authored papers 5
Robert M Waterhouse
University of Lausanne
Co-authored papers 5
Adam Frankish
Co-authored papers 5
Michael L Tress
Spanish National Cancer Research Centre (CNIO)
Co-authored papers 5
Nevan J Krogan (CM4AI)
University of California San Francisco
Co-authored papers 4
Mark Gerstein
Yale University
Co-authored papers 3
Mehdi Bouhaddou
J. David Gladstone Institutes
Co-authored papers 3
Manisha Ummadi
University of California, San Francisco
Co-authored papers 3
Mark Diekhans
Genomics Institute, University of California Santa Cruz
Co-authored papers 3
Danielle L Swaney
J. David Gladstone Institutes
Co-authored papers 3
Romel Rosales
Icahn School of Medicine at Mount Sinai
Co-authored papers 3
Lorena Zuliani-Alvarez
J. David Gladstone Institutes
Co-authored papers 3
Adrian Pelin
University of Ottawa
Co-authored papers 3
Margaret Soucheray
J. David Gladstone Institutes
Co-authored papers 3
Roderic Guig??
Barcelona Institute of Science and Technology
Co-authored papers 3
Greg J Towers
University College London
Co-authored papers 3
Matthew V X Whelan
University College London
Co-authored papers 3
Kliment A Verba
University of California, University of California San Francisco
Co-authored papers 3
Kirsten Obernier (CM4AI)
University of California San Francisco
Co-authored papers 3
Jyoti Batra
J. David Gladstone Institutes
Co-authored papers 3
Alan Saghatelian
Salk Institute for Biological Studies
Co-authored papers 3
Paola Bonfanti
University College London
Co-authored papers 3
Kris M White
Quantitative Biosciences Institute (QBI) Coronavirus Research Group (QCRG)
Co-authored papers 3
Yucheng T Yang
Co-authored papers 3
Rory Johnson
Co-authored papers 3
Fiona Cunningham
European Bioinformatics Institute
Co-authored papers 3
Jane Turner
University College London
Co-authored papers 3
Release 1.2