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Author Details

Stephen C J Parker
University of Michigan ann arbor
2006
57
28
Nathan Sheffield (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36727578Three-dimensional chromatin re-organization during muscle stem cell aging.Aging Cell2023
37873175Using a modular massively parallel reporter assay to discover context-specific regulatory grammars in type 2 diabetes.bioRxiv2023
36810122FixItFelix: improving genomic analysis by fixing reference errors.Genome Biol2023
37386251Noncoding variants alter GATA2 expression in rhombomere 4 motor neurons and cause dominant hereditary congenital facial paresis.Nat Genet2023
36727578Three-dimensional chromatin re-organization during muscle stem cell aging.Aging Cell2023
37873175Using a modular massively parallel reporter assay to discover context-specific regulatory grammars in type 2 diabetes.bioRxiv2023
37386251Noncoding variants alter GATA2 expression in rhombomere 4 motor neurons and cause dominant hereditary congenital facial paresis.Nat Genet2023
36810122FixItFelix: improving genomic analysis by fixing reference errors.Genome Biol2023
34038741Genetic effects on liver chromatin accessibility identify disease regulatory variants.Am J Hum Genet2021
33858413Multi-omic profiling of pituitary thyrotropic cells and progenitors.BMC Biol2021
33637709Chromatin information content landscapes inform transcription factor and DNA interactions.Nat Commun2021
33849996A Transcription Start Site Map in Human Pancreatic Islets Reveals Functional Regulatory Signatures.Diabetes2021
34038741Genetic effects on liver chromatin accessibility identify disease regulatory variants.Am J Hum Genet2021
34428183Combinatorial transcription factor profiles predict mature and functional human islet α and β cells.JCI Insight2021
33849996A Transcription Start Site Map in Human Pancreatic Islets Reveals Functional Regulatory Signatures.Diabetes2021
33637709Chromatin information content landscapes inform transcription factor and DNA interactions.Nat Commun2021
33858413Multi-omic profiling of pituitary thyrotropic cells and progenitors.BMC Biol2021
34428183Combinatorial transcription factor profiles predict mature and functional human islet α and β cells.JCI Insight2021
32404872BAF60a deficiency uncouples chromatin accessibility and cold sensitivity from white fat browning.Nat Commun2020
32029221Single-cell ATAC-Seq in human pancreatic islets and deep learning upscaling of rare cells reveals cell-specific type 2 diabetes regulatory signatures.Mol Metab2020
32404872BAF60a deficiency uncouples chromatin accessibility and cold sensitivity from white fat browning.Nat Commun2020
32213349Quantification, Dynamic Visualization, and Validation of Bias in ATAC-Seq Data with ataqv.Cell Syst2020
33060836CHD7 promotes neural progenitor differentiation in embryonic stem cells via altered chromatin accessibility and nascent gene expression.Sci Rep2020
32999275Genetic variant effects on gene expression in human pancreatic islets and their implications for T2D.Nat Commun2020
32029221Single-cell ATAC-Seq in human pancreatic islets and deep learning upscaling of rare cells reveals cell-specific type 2 diabetes regulatory signatures.Mol Metab2020
33060836CHD7 promotes neural progenitor differentiation in embryonic stem cells via altered chromatin accessibility and nascent gene expression.Sci Rep2020
32999275Genetic variant effects on gene expression in human pancreatic islets and their implications for T2D.Nat Commun2020
32213349Quantification, Dynamic Visualization, and Validation of Bias in ATAC-Seq Data with ataqv.Cell Syst2020
30380057Genome-wide chromatin accessibility and transcriptome profiling show minimal epigenome changes and coordinated transcriptional dysregulation of hedgehog signaling in Danforth's short tail mice.Hum Mol Genet2019
30593493Cell Specificity of Human Regulatory Annotations and Their Genetic Effects on Gene Expression.Genetics2019
30380057Genome-wide chromatin accessibility and transcriptome profiling show minimal epigenome changes and coordinated transcriptional dysregulation of hedgehog signaling in Danforth's short tail mice.Hum Mol Genet2019
30650367Multiomic Profiling Identifies cis-Regulatory Networks Underlying Human Pancreatic β Cell Identity and Function.Cell Rep2019
30756131Genomic annotation of disease-associated variants reveals shared functional contexts.Diabetologia2019
31342661Machine Learning to Predict Anti-Tumor Necrosis Factor Drug Responses of Rheumatoid Arthritis Patients by Integrating Clinical and Genetic Markers.Arthritis Rheumatol2019
31342661Machine Learning to Predict Anti-Tumor Necrosis Factor Drug Responses of Rheumatoid Arthritis Patients by Integrating Clinical and Genetic Markers.Arthritis Rheumatol2019
30756131Genomic annotation of disease-associated variants reveals shared functional contexts.Diabetologia2019
30650367Multiomic Profiling Identifies cis-Regulatory Networks Underlying Human Pancreatic β Cell Identity and Function.Cell Rep2019
30593493Cell Specificity of Human Regulatory Annotations and Their Genetic Effects on Gene Expression.Genetics2019
29618724Global dynamics of stage-specific transcription factor binding during thymocyte development.Sci Rep2018
29625024A Common Type 2 Diabetes Risk Variant Potentiates Activity of an Evolutionarily Conserved Islet Stretch Enhancer and Increases C2CD4A and C2CD4B Expression.Am J Hum Genet2018
29618724Global dynamics of stage-specific transcription factor binding during thymocyte development.Sci Rep2018
29659628Interactions between genetic variation and cellular environment in skeletal muscle gene expression.PLoS One2018
29792182BoostMe accurately predicts DNA methylation values in whole-genome bisulfite sequencing of multiple human tissues.BMC Genomics2018
29790915YAMDA: thousandfold speedup of EM-based motif discovery using deep learning libraries and GPU.Bioinformatics2018
29360107Erratum: Sequence data and association statistics from 12,940 type 2 diabetes cases and controls.Sci Data2018
29360107Erratum: Sequence data and association statistics from 12,940 type 2 diabetes cases and controls.Sci Data2018
29792182BoostMe accurately predicts DNA methylation values in whole-genome bisulfite sequencing of multiple human tissues.BMC Genomics2018
29659628Interactions between genetic variation and cellular environment in skeletal muscle gene expression.PLoS One2018
29790915YAMDA: thousandfold speedup of EM-based motif discovery using deep learning libraries and GPU.Bioinformatics2018
29625024A Common Type 2 Diabetes Risk Variant Potentiates Activity of an Evolutionarily Conserved Islet Stretch Enhancer and Increases C2CD4A and C2CD4B Expression.Am J Hum Genet2018
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Collaborators

Francis S Collins
University of Michigan ann arbor
Co-authored papers 23
Michael R Erdos
Center for Precision Health Research, National Human Genome Research Institute
Co-authored papers 16
Narisu Narisu
Co-authored papers 13
Michael L Stitzel
Institute for Systems Genomics
Co-authored papers 13
Laura J Scott
Co-authored papers 12
Michael Boehnke
Co-authored papers 12
Ryan P Welch
Co-authored papers 12
Elliott H Margulies
National Human Genome Research Institute, National Institutes of Health
Co-authored papers 12
Peter S Chines
Co-authored papers 11
Karen L Mohlke
Co-authored papers 9
Thomas D Tullius
Co-authored papers 9
Markku Laakso
Co-authored papers 9
Lori L Bonnycastle
Co-authored papers 7
Heikki A Koistinen
Co-authored papers 7
Jaakko Tuomilehto
Co-authored papers 7
Johanna Kuusisto
Co-authored papers 7
Jong-Young Lee
Co-authored papers 5
Richard M Watanabe
Co-authored papers 5
Andrew P Morris
The University of Manchester
Co-authored papers 5
Jaspal S Kooner
London NorthWest Healthcare NHS Trust
Co-authored papers 5
Christian Gieger
German Research Center for Cardiovascular Disease (DZHK)
Co-authored papers 5
Harald Grallert
Co-authored papers 5
Sian-Tsung Tan
National Heart and Lung Institute, Imperial College London
Co-authored papers 5
Ruth J F Loos
Co-authored papers 5
Leena Kinnunen
Co-authored papers 5
Nicholas J Wareham
Co-authored papers 5
Weihua Zhang
Imperial College London
Co-authored papers 5
Alena Stančáková
Co-authored papers 5
Tim D Spector
King's College London
Co-authored papers 5
Veikko Salomaa
Co-authored papers 5
Release 1.2