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Author Details

Ying Xu
The China-Japan Union Hospital, Jilin University
2002
155
37
PMIDPaper TitleJournal TitlePublished Year
35096262Downregulation of PIK3CB Involved in Alzheimer's Disease via Apoptosis, Axon Guidance, and FoxO Signaling Pathway.Oxid Med Cell Longev2022
35432724Molecular Signatures of Mitochondrial Complexes Involved in Alzheimer's Disease via Oxidative Phosphorylation and Retrograde Endocannabinoid Signaling Pathways.Oxid Med Cell Longev2022
35571248Down-Regulation of Insulin Like Growth Factor 1 Involved in Alzheimer's Disease via MAPK, Ras, and FoxO Signaling Pathways.Oxid Med Cell Longev2022
35154571Cross-Talking Pathways of Forkhead Box O1 (FOXO1) Are Involved in the Pathogenesis of Alzheimer's Disease and Huntington's Disease.Oxid Med Cell Longev2022
34336099Integrative Functional Genomic Analysis of Molecular Signatures and Mechanistic Pathways in the Cell Cycle Underlying Alzheimer's Disease.Oxid Med Cell Longev2021
33631722Functional analysis of brain derived neurotrophic factor (BDNF) in Huntington's disease.Aging (Albany NY)2021
34956428Integrative genomic analysis of PPP3R1 in Alzheimer's disease: a potential biomarker for predictive, preventive, and personalized medical approach.EPMA J2021
34788347Mathematical model and computational scheme for multi-phase modeling of cellular population and microenvironmental dynamics in soft tissue.PLoS One2021
34785949A Novel Predictive Model Associated with Osteosarcoma Metastasis.Cancer Manag Res2021
33981384Downregulation of ATP6V1A Involved in Alzheimer's Disease via Synaptic Vesicle Cycle, Phagosome, and Oxidative Phosphorylation.Oxid Med Cell Longev2021
32528526Quantitative Estimation of Oxidative Stress in Cancer Tissue Cells Through Gene Expression Data Analyses.Front Genet2020
31932456Metabolic Reprogramming in Cancer Is Induced to Increase Proton Production.Cancer Res2020
33186918Molecular identification of protein kinase C beta in Alzheimer's disease.Aging (Albany NY)2020
33320601Smart Adhesive Peptide Nanofibers for Cell Capture and Release.ACS Biomater Sci Eng2020
29596572Structural and functional analyses of microbial metabolic networks reveal novel insights into genome-scale metabolic fluxes.Brief Bioinform2019
31827762Transcriptome analysis reveals an important candidate gene involved in both nodal metastasis and prognosis in lung adenocarcinoma.Cell Biosci2019
31071451Warburg Effects in Cancer and Normal Proliferating Cells: Two Tales of the Same Name.Genomics Proteomics Bioinformatics2019
29625128Physical properties of DNA may direct the binding of nucleoid-associated proteins along the E. coli genome.Math Biosci2018
30016460Fenton reactions drive nucleotide and ATP syntheses in cancer.J Mol Cell Biol2018
29951114Revealing the transcriptomic complexity of switchgrass by PacBio long-read sequencing.Biotechnol Biofuels2018
30248119Elucidation and analyses of the regulatory networks of upland and lowland ecotypes of switchgrass in response to drought and salt stresses.PLoS One2018
28611042Competition between DNA Methylation, Nucleotide Synthesis, and Antioxidation in Cancer versus Normal Tissues.Cancer Res2017
28300180Systems-level understanding of ethanol-induced stresses and adaptation in E. coli.Sci Rep2017
28266571SeqTU: A Web Server for Identification of Bacterial Transcription Units.Sci Rep2017
29116024Systematic analyses of glutamine and glutamate metabolisms across different cancer types.Chin J Cancer2017
27747870Amino acid transporter SLC6A14 is a novel and effective drug target for pancreatic cancer.Br J Pharmacol2016
24828886Cancer may be a pathway to cell survival under persistent hypoxia and elevated ROS: a model for solid-cancer initiation and early development.Int J Cancer2015
26538447Revisiting operons: an analysis of the landscape of transcriptional units in E. coli.BMC Bioinformatics2015
26375396Identification of Gene-Expression Signatures and Protein Markers for Breast Cancer Grading and Staging.PLoS One2015
26077026Somatic mutations may not be the primary drivers of cancer formation.Int J Cancer2015
26003569Elucidation of drivers of high-level production of lactates throughout a cancer development.J Mol Cell Biol2015
25657638Global O-GlcNAc Levels Modulate Transcription of the Adipocyte Secretome during Chronic Insulin Resistance.Front Endocrinol (Lausanne)2015
25765651Analysis of strand-specific RNA-seq data using machine learning reveals the structures of transcription units in Clostridium thermocellum.Nucleic Acids Res2015
25422082Comprehensive characterization of the genomic alterations in human gastric cancer.Int J Cancer2015
23275634Reconsideration of in silico siRNA design from a perspective of heterogeneous data integration: problems and solutions.Brief Bioinform2014
25234108Understanding the commonalities and differences in genomic organizations across closely related bacteria from an energy perspective.Sci China Life Sci2014
25268881Identification of essential proteins based on ranking edge-weights in protein-protein interaction networks.PLoS One2014
24753419DMINDA: an integrated web server for DNA motif identification and analyses.Nucleic Acids Res2014
24892935AST: an automated sequence-sampling method for improving the taxonomic diversity of gene phylogenetic trees.PLoS One2014
24371277A phylogenetic model for understanding the effect of gene duplication on cancer progression.Nucleic Acids Res2014
24467758Functional understanding of the diverse exon-intron structures of human GPCR genes.J Bioinform Comput Biol2014
24214966DOOR 2.0: presenting operons and their functions through dynamic and integrated views.Nucleic Acids Res2014
23510199The endothelial lipase protein is promising urinary biomarker for diagnosis of gastric cancer.Diagn Pathol2013
24324552Computational prediction of human salivary proteins from blood circulation and application to diagnostic biomarker identification.PLoS One2013
23913214Microarray-based transcriptome profiling of ovarian cancer cells.Methods Mol Biol2013
23846744An integrated toolkit for accurate prediction and analysis of cis-regulatory motifs at a genome scale.Bioinformatics2013
23967163Elucidation of how cancer cells avoid acidosis through comparative transcriptomic data analysis.PLoS One2013
23599001Computational analyses of transcriptomic data reveal the dynamic organization of the Escherichia coli chromosome under different conditions.Nucleic Acids Res2013
23434046Global genomic arrangement of bacterial genes is closely tied with the total transcriptional efficiency.Genomics Proteomics Bioinformatics2013
23457606Barcode server: a visualization-based genome analysis system.PLoS One2013
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Collaborators

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Co-authored papers 39
University of North Carolina at Charlotte
Co-authored papers 13
Oregon Health & Science University
Co-authored papers 5
University of Georgia
Co-authored papers 4
University of Missouri
Co-authored papers 3
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Co-authored papers 3
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Co-authored papers 2
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University of California riverside
Co-authored papers 2
Macquarie University
Co-authored papers 2
Pacific Northwest National Laboratory
Co-authored papers 1
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University of Tennessee Knoxville
Co-authored papers 1
Oak Ridge National Laboratory
Co-authored papers 1
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University of Oxford
Co-authored papers 1
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Pacific Northwest National Laboratory
Co-authored papers 1
Cancer Center, Texas Tech University Health Sciences Center
Co-authored papers 1
Co-authored papers 1
Complex Carbohydrate Research Center, University of Georgia
Co-authored papers 1
Institute for Brain and Intelligence, Southeast University
Co-authored papers 1
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Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University
Co-authored papers 1
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Ansan Hospital, Korea University
Co-authored papers 1