Author details

Full Name

Daniel B McClatchy

Affiliation

ORCID

Career Start Year

2001

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
37546719	Native top-down proteomics reveals EGFR-ERÎ± signaling crosstalk in breast cancer cells dissociates NUTF2 dimers to modulate ERÎ± signaling and cell growth.	Res Sq	2023
37681413	Mocetinostat activates KrÃ¼ppel-like factor 4 and protects against tissue destruction and inflammation in osteoarthritis.		2023
37397995	<i>In vivo</i> Protein Footprinting Reveals the Dynamic Conformational Changes of Proteome of Multiple Tissues in Progressing Alzheimer's Disease.	bioRxiv	2023
37066274	Do perineuronal nets stabilize the engram of a synaptic circuit?	bioRxiv	2023
36993270	Phosphorylation of pyruvate dehydrogenase marks the inhibition of <i>in vivo</i> neuronal activity.	bioRxiv	2023
35081342	Proteomic screen reveals diverse protein transport between connected neurons in the visual system.	Cell Rep	2022
36261270	Activity-Induced Cortical Glutamatergic Neuron Nascent Proteins.	J Neurosci	2022
34816099	Interactome analysis illustrates diverse gene regulatory processes associated with LIN28A in human iPS cell-derived neural progenitor cells.	iScience	2021
33888873	Altered network and rescue of human neurons derived from individuals with early-onset genetic epilepsy.	Mol Psychiatry	2021
33147027	Temporal Quantitative Profiling of Newly Synthesized Proteins during AÎ² Accumulation.	Journal of Proteome Research	2021
32510229	Impact of the Identification Strategy on the Reproducibility of the DDA and DIA Results.	J Proteome Res	2020
31880919	Improving Proteomics Data Reproducibility with a Dual-Search Strategy.	Anal Chem	2020
32994440	Quantitative analysis of global protein stability rates in tissues.	Sci Rep	2020
33024077	Intracellular amyloid toxicity induces oxytosis/ferroptosis regulated cell death.	Cell Death Dis	2020
31320591	Exosomes regulate neurogenesis and circuit assembly.	Proc Natl Acad Sci U S A	2019
31412257	The Retinal Ganglion Cell Transportome Identifies Proteins Transported to Axons and Presynaptic Compartments in the Visual System InÂ Vivo.	Cell Rep	2019
31260318	Proteomics INTegrator (PINT): An Online Tool To Store, Query, and Visualize Large Proteomics Experiment Results.	J Proteome Res	2019
29412139	Role of the visual experience-dependent nascent proteome in neuronal plasticity.	Elife	2018
30544849	From Synapse to Function: A Perspective on the Role of Neuroproteomics in Elucidating Mechanisms of Drug Addiction.	Proteomes	2018
30009778	Quantitative temporal analysis of protein dynamics in cardiac remodeling.	J Mol Cell Cardiol	2018
30053369	Structural Analysis of Hippocampal Kinase Signal Transduction.	ACS Chem Neurosci	2018
30038347	Quantitative analysis of newly synthesized proteins.	Nat Protoc	2018
29166608	S-Nitrosylation of PINK1 Attenuates PINK1/Parkin-Dependent Mitophagy in hiPSC-Based Parkinson's Disease Models.	Cell Rep	2017
28437088	HILAQ: A Novel Strategy for Newly Synthesized Protein Quantification.	J Proteome Res	2017
29186695	Amyloid Accumulation Drives Proteome-wide Alterations in Mouse Models of Alzheimer's Disease-like Pathology.	Cell Rep	2017
25869802	Global quantitative analysis of phosphorylation underlying phencyclidine signaling and sensorimotor gating in the prefrontal cortex.	Mol Psychiatry	2016
26445171	Pulsed Azidohomoalanine Labeling in Mammals (PALM) Detects Changes in Liver-Specific LKB1 Knockout Mice.	J Proteome Res	2015
25177766	PSEA-Quant: a protein set enrichment analysis on label-free and label-based protein quantification data.	J Proteome Res	2014
24681903	Census 2: isobaric labeling data analysis.	Bioinformatics	2014
24529705	Acute synthesis of CPEB is required for plasticity of visual avoidance behavior in Xenopus.	Cell Rep	2014
25117199	Direct detection of biotinylated proteins by mass spectrometry.	J Proteome Res	2014
24791985	Stable isotope labeling in mammals (SILAM).	Methods Mol Biol	2014
23214967	Comparison of protein expression ratios observed by sixplex and duplex TMT labeling method.	J Proteome Res	2013
23523555	Stable isotope labeling of mammals (SILAM) for in vivo quantitative proteomic analysis.	Methods	2013
22563702	Characterization of breast cancer interstitial fluids by TmT labeling, LTQ-Orbitrap Velos mass spectrometry, and pathway analysis.	J Proteome Res	2012
22397461	Dynamics of subcellular proteomes during brain development.	J Proteome Res	2012
21283754	Differential proteomic analysis of mammalian tissues using SILAM.	PLoS One	2011
20058176	Shotgun protein identification and quantification by mass spectrometry in neuroproteomics.	Methods Mol Biol	2009
19607789	Shotgun proteomics in neuroscience.	Neuron	2009
18823140	Quantitative analysis of brain nuclear phosphoproteins identifies developmentally regulated phosphorylation events.	J Proteome Res	2008
21356771	Stable Isotope Labeling of Mammals (SILAM).	CSH Protoc	2008
18780349	Strategies for shotgun identification of integral membrane proteins by tandem mass spectrometry.	Proteomics	2008
18452278	Motif-specific sampling of phosphoproteomes.	J Proteome Res	2008
18937422	Comparisons of mass spectrometry compatible surfactants for global analysis of the mammalian brain proteome.	Anal Chem	2008
17620599	Functional specialization of beta-arrestin interactions revealed by proteomic analysis.	Proc Natl Acad Sci U S A	2007
17375949	15N metabolic labeling of mammalian tissue with slow protein turnover.	J Proteome Res	2007
17367114	Relative quantification of stable isotope labeled peptides using a linear ion trap-Orbitrap hybrid mass spectrometer.	Anal Chem	2007
17675365	Quantification of the synaptosomal proteome of the rat cerebellum during post-natal development.	Genome Res	2007
16845586	Elongation factor 1A family regulates the recycling of the M4 muscarinic acetylcholine receptor.	Neurochem Res	2006
16257420	The dynamic relationship between mu and kappa opioid receptors in body temperature regulation.	Life Sciences	2005