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Author Details

Matthew R Laird
European Bioinformatics Institute
2005
21
17
Nathan Sheffield (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
33313828PSORTdb 4.0: expanded and redesigned bacterial and archaeal protein subcellular localization database incorporating new secondary localizations.Nucleic Acids Res2021
34260694Refget: standardized access to reference sequences.Bioinformatics2021
30407521Ensembl 2019.Nucleic Acids Res2019
29155950Ensembl 2018.Nucleic Acids Res2018
27899575Ensembl 2017.Nucleic Acids Res2017
28365736Ensembl core software resources: storage and programmatic access for DNA sequence and genome annotation.Database (Oxford)2017
28472413IslandViewer 4: expanded prediction of genomic islands for larger-scale datasets.Nucleic Acids Res2017
26602691PSORTdb: expanding the bacteria and archaea protein subcellular localization database to better reflect diversity in cell envelope structures.Nucleic Acids Res2016
25916842IslandViewer 3: more flexible, interactive genomic island discovery, visualization and analysis.Nucleic Acids Res2015
26093150GenomeD3Plot: a library for rich, interactive visualizations of genomic data in web applications.Bioinformatics2015
23180781InnateDB: systems biology of innate immunity and beyond--recent updates and continuing curation.Nucleic Acids Res2013
23677610IslandViewer update: Improved genomic island discovery and visualization.Nucleic Acids Res2013
23203876OrtholugeDB: a bacterial and archaeal orthology resource for improved comparative genomic analysis.Nucleic Acids Res2013
22576174MicrobeDB: a locally maintainable database of microbial genomic sequences.Bioinformatics2012
21071402PSORTdb--an expanded, auto-updated, user-friendly protein subcellular localization database for Bacteria and Archaea.Nucleic Acids Res2011
20472543PSORTb 3.0: improved protein subcellular localization prediction with refined localization subcategories and predictive capabilities for all prokaryotes.Bioinformatics2010
20727158Curating the innate immunity interactome.BMC Syst Biol2010
18766178InnateDB: facilitating systems-level analyses of the mammalian innate immune response.Mol Syst Biol2008
16729895Improving the specificity of high-throughput ortholog prediction.BMC Bioinformatics2006
15501914PSORTb v.2.0: expanded prediction of bacterial protein subcellular localization and insights gained from comparative proteome analysis.Bioinformatics2005
15608169PSORTdb: a protein subcellular localization database for bacteria.Nucleic Acids Res2005
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Collaborators

Fiona S L Brinkman
Simon Fraser University
Co-authored papers 16
Andrew D Yates
European Bioinformatics Institute
Co-authored papers 5
Morgan G I Langille
Dalhousie University
Co-authored papers 4
Paul Flicek
European Bioinformatics Institute
Co-authored papers 4
Daniel R Zerbino
European Bioinformatics Institute
Co-authored papers 4
Daniel M Staines
European Bioinformatics Institute
Co-authored papers 4
Robert E W Hancock
University of British Columbia
Co-authored papers 3
Sarah E Hunt
European Bioinformatics Institute
Co-authored papers 3
Premanand Achuthan
European Bioinformatics Institute
Co-authored papers 3
David J Lynn
South Australian Health and Medical Research Institute
Co-authored papers 3
Myrto Kostadima
Co-authored papers 3
Fiona Cunningham
European Bioinformatics Institute
Co-authored papers 3
Helen Schuilenburg
European Bioinformatics Institute
Co-authored papers 2
Adam Frankish
Co-authored papers 2
Karin Breuer
Simon Fraser University
Co-authored papers 2
Rishi Nag
European Bioinformatics Institute
Co-authored papers 2
Jonathan A Eisen
McLean Hospital
Co-authored papers 1
Nathan Sheffield (CM4AI)
University of Virginia
Co-authored papers 1
Karsten Hokamp
Smurfit Institute of Genetics, Trinity College of Dublin
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Robert M Davies
Wellcome Sanger Institute
Co-authored papers 1
Oliver Hofmann
University of Melbourne
Co-authored papers 1
Thomas M Keane
European Bioinformatics Institute
Co-authored papers 1
Stephen M J Searle
Wellcome Trust Sanger Institute
Co-authored papers 1
Somesh Chaturvedi
European Bioinformatics Institute
Co-authored papers 1
Rasko Leinonen
European Bioinformatics Institute
Co-authored papers 1
Caitlyn Vlasschaert
Queen's University
Co-authored papers 1
Suleyman Cenk Sahinalp
National Cancer Institute, National Institutes of Health
Co-authored papers 1
Joannella Morales
Co-authored papers 1
Daniel Barrell
Oncology R&D
Co-authored papers 1
Tiago Grego
Co-authored papers 1
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