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Author Details

Aaron Diaz
University of California san francisco
2012
37
23
Nevan J Krogan (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36856115Single-cell RNA sequencing and spatial transcriptomics reveal cancer-associated fibroblasts in glioblastoma with protumoral effects.J Clin Invest2023
36993266Glioblastoma induces the recruitment and differentiation of hybrid neutrophils from skull bone marrow.bioRxiv2023
36856115Single-cell RNA sequencing and spatial transcriptomics reveal cancer-associated fibroblasts in glioblastoma with protumoral effects.J Clin Invest2023
37219874PP2Ac Deficiency Enhances Tumor Immunogenicity by Activating STING-Type I Interferon Signaling in Glioblastoma.Cancer Res2023
37219874PP2Ac Deficiency Enhances Tumor Immunogenicity by Activating STING-Type I Interferon Signaling in Glioblastoma.Cancer Res2023
36993266Glioblastoma induces the recruitment and differentiation of hybrid neutrophils from skull bone marrow.bioRxiv2023
35235678Loss of ATRX suppresses anti-tumor immunity.Neuro Oncol2022
36471067The landscape of tumor cell states and spatial organization in H3-K27M mutant diffuse midline glioma across age and location.Nat Genet2022
36539501A single-cell atlas of glioblastoma evolution under therapy reveals cell-intrinsic and cell-extrinsic therapeutic targets.Nat Cancer2022
35235678Loss of ATRX suppresses anti-tumor immunity.Neuro Oncol2022
36471067The landscape of tumor cell states and spatial organization in H3-K27M mutant diffuse midline glioma across age and location.Nat Genet2022
36539501A single-cell atlas of glioblastoma evolution under therapy reveals cell-intrinsic and cell-extrinsic therapeutic targets.Nat Cancer2022
33367885Unique challenges for glioblastoma immunotherapy-discussions across neuro-oncology and non-neuro-oncology experts in cancer immunology. Meeting Report from the 2019 SNO Immuno-Oncology Think Tank.Neuro Oncol2021
34025646TIGIT and PD-1 Immune Checkpoint Pathways Are Associated With Patient Outcome and Anti-Tumor Immunity in Glioblastoma.Front Immunol2021
33499924The evolution of alternative splicing in glioblastoma under therapy.Genome Biol2021
33758101miRNA-independent function of long noncoding pri-miRNA loci.Proc Natl Acad Sci U S A2021
33367885Unique challenges for glioblastoma immunotherapy-discussions across neuro-oncology and non-neuro-oncology experts in cancer immunology. Meeting Report from the 2019 SNO Immuno-Oncology Think Tank.Neuro Oncol2021
34763709ATRX regulates glial identity and the tumor microenvironment in IDH-mutant glioma.Genome Biol2021
33758101miRNA-independent function of long noncoding pri-miRNA loci.Proc Natl Acad Sci U S A2021
33499924The evolution of alternative splicing in glioblastoma under therapy.Genome Biol2021
34763709ATRX regulates glial identity and the tumor microenvironment in IDH-mutant glioma.Genome Biol2021
34025646TIGIT and PD-1 Immune Checkpoint Pathways Are Associated With Patient Outcome and Anti-Tumor Immunity in Glioblastoma.Front Immunol2021
32296839Exosomal PD-L1 induces immunosuppressive nonclassical monocytes.Neuro Oncol2020
31901251Outer Radial Glia-like Cancer Stem Cells Contribute to Heterogeneity of Glioblastoma.Cell Stem Cell2020
32296839Exosomal PD-L1 induces immunosuppressive nonclassical monocytes.Neuro Oncol2020
32105316Ensemble learning for classifying single-cell data and projection across reference atlases.Bioinformatics2020
32041837Clonal ZEB1-Driven Mesenchymal Transition Promotes Targetable Oncologic Antiangiogenic Therapy Resistance.Cancer Res2020
31901251Outer Radial Glia-like Cancer Stem Cells Contribute to Heterogeneity of Glioblastoma.Cell Stem Cell2020
32041837Clonal ZEB1-Driven Mesenchymal Transition Promotes Targetable Oncologic Antiangiogenic Therapy Resistance.Cancer Res2020
32105316Ensemble learning for classifying single-cell data and projection across reference atlases.Bioinformatics2020
30813960The immune suppressive microenvironment of human gliomas depends on the accumulation of bone marrow-derived macrophages in the center of the lesion.J Immunother Cancer2019
31554641The Phenotypes of Proliferating Glioblastoma Cells Reside on a Single Axis of Variation.Cancer Discov2019
30813960The immune suppressive microenvironment of human gliomas depends on the accumulation of bone marrow-derived macrophages in the center of the lesion.J Immunother Cancer2019
31319050Thermoregulation via Temperature-Dependent PGD<sub>2</sub> Production in Mouse Preoptic Area.Neuron2019
31554641The Phenotypes of Proliferating Glioblastoma Cells Reside on a Single Axis of Variation.Cancer Discov2019
31319050Thermoregulation via Temperature-Dependent PGD<sub>2</sub> Production in Mouse Preoptic Area.Neuron2019
29499153The Transcriptionally Permissive Chromatin State of Embryonic Stem Cells Is Acutely Tuned to Translational Output.Cell Stem Cell2018
29897414CONICS integrates scRNA-seq with DNA sequencing to map gene expression to tumor sub-clones.Bioinformatics2018
29618666Peptide vaccine immunotherapy biomarkers and response patterns in pediatric gliomas.JCI Insight2018
29499153The Transcriptionally Permissive Chromatin State of Embryonic Stem Cells Is Acutely Tuned to Translational Output.Cell Stem Cell2018
29897414CONICS integrates scRNA-seq with DNA sequencing to map gene expression to tumor sub-clones.Bioinformatics2018
29618666Peptide vaccine immunotherapy biomarkers and response patterns in pediatric gliomas.JCI Insight2018
28620412Single-Cell mRNA Sequencing in Cancer Research: Integrating the Genomic Fingerprint.Front Genet2017
28620412Single-Cell mRNA Sequencing in Cancer Research: Integrating the Genomic Fingerprint.Front Genet2017
29262845Single-cell profiling of human gliomas reveals macrophage ontogeny as a basis for regional differences in macrophage activation in the tumor microenvironment.Genome Biol2017
29118406Single-cell Co-expression Subnetwork Analysis.Sci Rep2017
29118406Single-cell Co-expression Subnetwork Analysis.Sci Rep2017
29262845Single-cell profiling of human gliomas reveals macrophage ontogeny as a basis for regional differences in macrophage activation in the tumor microenvironment.Genome Biol2017
27081004Single-cell analysis of long non-coding RNAs in the developing human neocortex.Genome Biol2016
27153637SCell: integrated analysis of single-cell RNA-seq data.Bioinformatics2016
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Collaborators

Daniel A Lim
University of California san francisco
Co-authored papers 10
Jun S Song
University of Illinois at Urbana-Champaign
Co-authored papers 8
Siyuan John Liu
University of California San Francisco.
Co-authored papers 8
Manish K Aghi
University of California san francisco
Co-authored papers 7
Arnold R Kriegstein
University of California san francisco
Co-authored papers 7
Tomasz J Nowakowski
University of California san francisco
Co-authored papers 5
Garima Yagnik
University of California at San Francisco
Co-authored papers 5
Gary Kohanbash
Co-authored papers 5
Hideho Okada
Co-authored papers 5
Miguel Ramalho-Santos
University of Toronto
Co-authored papers 4
Joseph F Costello
University of California san francisco
Co-authored papers 4
Joanna J Phillips
University of California san francisco
Co-authored papers 3
Abhinav Nellore
Oregon Health & Science University
Co-authored papers 3
Michael T McManus
Co-authored papers 3
David R Raleigh
University of California san francisco
Co-authored papers 3
Sameer Agnihotri
Co-authored papers 3
Alan T Nguyen
Helen Diller Comprehensive Cancer Center, University of California san francisco
Co-authored papers 3
Michael C Oldham
University of California san francisco
Co-authored papers 2
Ian F Pollack
University of Pittsburgh School of Medicine
Co-authored papers 2
Jonathan W Rick
University of Arkansas for Medical Sciences
Co-authored papers 2
Ankush Chandra
University of California san francisco
Co-authored papers 2
Daniel He
Co-authored papers 2
Kati J Ernst
Co-authored papers 1
Dhivyaa Rajasundaram
Co-authored papers 1
Mats Nilsson
Stockholm University
Co-authored papers 1
Susanna Rosi
Co-authored papers 1
Maria Trissal
Co-authored papers 1
Jayne Vogelzang
Co-authored papers 1
Nevan J Krogan (CM4AI)
University of California San Francisco
Co-authored papers 1
Lisa Mayr
Co-authored papers 1
Release 1.2