Author details

Full Name

Stefano Monti

Affiliation

ORCID

Career Start Year

1998

Papers

109

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
37542347	Total RNA sequencing reveals gene expression and microbial alterations shared by oral pre-malignant lesions and cancer.		2023
35997888	A metabolomic signature of the APOE2 allele.	Geroscience	2023
36712131	Bayesian Differential Analysis of Cell Type Proportions.		2023
37200395	Structure learning for gene regulatory networks.		2023
37323674	Bayesian differential analysis of cell type proportions: opinion.		2023
36993637	Total RNA sequencing reveals gene expression and microbial alterations shared by oral pre-malignant lesions and cancer.		2023
37353110	Î²-catenin/CBP activation of mTORC1 signaling promotes partial epithelial-mesenchymal states in head and neck cancer.		2023
36988570	Mosaic Chromosomal Alterations and Human Longevity.		2023
35105672	Inhibition of LSD1 Attenuates Oral Cancer Development and Promotes Therapeutic Efficacy of Immune Checkpoint Blockade and YAP/TAZ Inhibition.	Molecular Cancer Research	2022
35696261	Serum Orotidine: A Novel Biomarker of Increased CVD Risk in Type 2 Diabetes Discovered Through Metabolomics Studies.	Diabetes Care	2022
36443313	Inactivation of LATS1/2 drives luminal-basal plasticity to initiate basal-like mammary carcinomas.	Nature Communications	2022
35464841	Cell Type Diversity Statistic: An Entropy-Based Metric to Compare Overall Cell Type Composition Across Samples.	Frontiers in Genetics	2022
36644690	Novel plasma exosome biomarkers for prostate cancer progression in co-morbid metabolic disease.		2022
34323617	A Data-Driven Transcriptional Taxonomy of Adipogenic Chemicals to Identify White and Brite Adipogens.	Environmental Health Perspectives	2021
35647481	nf-gwas-pipeline: A Nextflow Genome-Wide Association Study Pipeline.	J Open Source Softw	2021
33490071	Loss of G-Protein Pathway Suppressor 2 Promotes Tumor Growth Through Activation of AKT Signaling.	Front Cell Dev Biol	2021
34226941	Multi-resolution characterization of molecular taxonomies in bulk and single-cell transcriptomics data.	Nucleic Acids Research	2021
33948810	Effect of longevity genetic variants on the molecular aging rate.	Geroscience	2021
34045583	Gene expression alterations in salivary gland epithelia of SjÃ¶gren's syndrome patients are associated with clinical and histopathological manifestations.	Scientific Reports	2021
33775256	animalcules: interactive microbiome analytics and visualization in R.	Microbiome	2021
33512769	Protein signatures of centenarians and their offspring suggest centenarians age slower than other humans.	Aging Cell	2021
33511361	Contextualized Protein-Protein Interactions.	Patterns	2021
34260916	Yap/Taz inhibit goblet cell fate to maintain lung epithelial homeostasis.	Cell Reports	2021
34143375	Correction to: Effect of longevity genetic variants on the molecular aging rate.	Geroscience	2021
31498385	hypeR: an R package for geneset enrichment workflows.		2020
32203567	Î²-Catenin/CBP inhibition alters epidermal growth factor receptor fucosylation status in oral squamous cell carcinoma.	Mol Omics	2020
33109615	Naturally occurring hotspot cancer mutations in GÎ± promote oncogenic signaling.	Journal of Biological Chemistry	2020
33396563	How the AHR Became Important in Cancer: The Role of Chronically Active AHR in Cancer Aggression.	International Journal of Molecular Sciences	2020
31471373	CXCR4 upregulation is an indicator of sensitivity to B-cell receptor/PI3K blockade and a potential resistance mechanism in B-cell receptor-dependent diffuse large B-cell lymphomas.	Haematologica	2020
31316552	Pipeliner: A Nextflow-Based Framework for the Definition of Sequencing Data Processing Pipelines.	Frontiers in Genetics	2019
31729402	Identification of candidate cancer drivers by integrative Epi-DNA and Gene Expression (iEDGE) data analysis.	Sci Rep	2019
30624692	PopCluster: an algorithm to identify genetic variants with ethnicity-dependent effects.	Bioinformatics	2019
30964323	The Carcinogenome Project: In Vitro Gene Expression Profiling of Chemical Perturbations to Predict Long-Term Carcinogenicity.	Environ Health Perspect	2019
31385390	A serum protein signature of APOE genotypes in centenarians.	Aging Cell	2019
30891063	Assessment of a Highly Multiplexed RNA Sequencing Platform and Comparison to Existing High-Throughput Gene Expression Profiling Techniques.	Frontiers in Genetics	2019
30838036	CaDrA: A Computational Framework for Performing Candidate Driver Analyses Using Genomic Features.	Front Genet	2019
29735912	Towards Resolving the Pro- and Anti-Tumor Effects of the Aryl Hydrocarbon Receptor.	International Journal of Molecular Sciences	2018
30029671	Functional and genomic analyses reveal therapeutic potential of targeting Î²-catenin/CBP activity in head and neck cancer.	Genome Med	2018
30027469	Tributyltin induces a transcriptional response without a brite adipocyte signature in adipocyte models.	Archives of Toxicology	2018
29955181	Publisher Correction: Molecular subtypes of diffuse large B cell lymphoma are associated with distinct pathogenic mechanisms and outcomes.	Nat Med	2018
29955182	Author Correction: Molecular subtypes of diffuse large B cell lymphoma are associated with distinct pathogenic mechanisms and outcomes.	Nat Med	2018
29720612	Author Correction: Cancer cell responses to Hsp70 inhibitor JG-98: Comparison with Hsp90 inhibitors and finding synergistic drug combinations.	Scientific Reports	2018
29445088	Cancer cell responses to Hsp70 inhibitor JG-98: Comparison with Hsp90 inhibitors and finding synergistic drug combinations.	Scientific Reports	2018
29713087	Molecular subtypes of diffuse large B cell lymphoma are associated with distinct pathogenic mechanisms and outcomes.	Nat Med	2018
29661856	Glutamine-utilizing transaminases are a metabolic vulnerability of TAZ/YAP-activated cancer cells.	EMBO Rep	2018
28039360	Inhibition of Ubc13-mediated Ubiquitination by GPS2 Regulates Multiple Stages of B Cell Development.	Journal of Biological Chemistry	2017
28684539	PPR polyadenylation factor defines mitochondrial mRNA identity and stability in trypanosomes.	EMBO J	2017
28361664	Network-based analysis of transcriptional profiles from chemical perturbations experiments.	BMC Bioinformatics	2017
29088714	Inhibition of LSD1 epigenetically attenuates oral cancer growth and metastasis.	Oncotarget	2017
28162994	Thyroid Progenitors Are Robustly Derived from Embryonic Stem Cells through Transient, Developmental Stage-Specific Overexpression of Nkx2-1.	Stem Cell Reports	2017