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Author Details

Vera van Noort
Leiden University, Institute of Biology Leiden
2003
80
36
Nevan J Krogan (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36477801DARTpaths, an in silico platform to investigate molecular mechanisms of compounds.Bioinformatics2023
37392220Molecular Evolution of Aryl Hydrocarbon Receptor Signaling Pathway Genes.J Mol Evol2023
37168120Genomic diversity and metabolic potential of marine <i>Pseudomonadaceae</i>.Front Microbiol2023
34465897Genome-driven elucidation of phage-host interplay and impact of phage resistance evolution on bacterial fitness.ISME J2022
35561201SASpector: analysis of missing genomic regions in draft genomes of prokaryotes.Bioinformatics2022
34952265Digital phagograms: predicting phage infectivity through a multilayer machine learning approach.Curr Opin Virol2022
35042848Combination of pre-adapted bacteriophage therapy and antibiotics for treatment of fracture-related infection due to pandrug-resistant Klebsiella pneumoniae.Nat Commun2022
34971929Shopping for phages? Unpacking design rules for therapeutic phage cocktails.Curr Opin Virol2022
33979327Molecular dynamics shows complex interplay and long-range effects of post-translational modifications in yeast protein interactions.PLoS Comput Biol2021
33720991Genomics of an endemic cystic fibrosis Burkholderia multivorans strain reveals low within-patient evolution but high between-patient diversity.PLoS Pathog2021
34950447Towards a reporting guideline for developmental and reproductive toxicology testing in <i>C. elegans</i> and other nematodes.Toxicol Res (Camb)2021
34556718The complete genome of 2,6-dichlorobenzamide (BAM) degrader Aminobacter sp. MSH1 suggests a polyploid chromosome, phylogenetic reassignment, and functions of plasmids.Sci Rep2021
34452408Bacteriophage Therapy for Difficult-to-Treat Infections: The Implementation of a Multidisciplinary Phage Task Force (<i>The PHAGEFORCE Study Protocol</i>).Viruses2021
34681765Unraveling Protein Interactions between the Temperate Virus Bam35 and Its <i>Bacillus</i> Host Using an Integrative Yeast Two Hybrid-High Throughput Sequencing Approach.Int J Mol Sci2021
34442845The Ever-Expanding <i>Pseudomonas</i> Genus: Description of 43 New Species and Partition of the <i>Pseudomonas putida</i> Group.Microorganisms2021
34236875Integrated Multi-Omics Analysis of Mechanisms Underlying Yeast Ethanol Tolerance.J Proteome Res2021
32537492A VersaTile-driven platform for rapid hit-to-lead development of engineered lysins.Sci Adv2020
36147895Host Range Expansion of <i>Pseudomonas</i> Virus LUZ7 Is Driven by a Conserved Tail Fiber Mutation.Phage (New Rochelle)2020
31705391The Genome of the Plant-Associated Lactic Acid Bacterium Lactococcus lactis KF147 Harbors a Hybrid NRPS-PKS System Conserved in Strains of the Dental Cariogenic Streptococcus mutans.Curr Microbiol2020
32690586Completed Genomic Sequence of <i>Bacillus thuringiensis</i> HER1410 Reveals a <i>Cry</i>-Containing Chromosome, Two Megaplasmids, and an Integrative Plasmidial Prophage.G3 (Bethesda)2020
32998531Quality control and statistical evaluation of combinatorial DNA libraries using nanopore sequencing.Biotechniques2020
32752051Reliable Identification of Environmental <i>Pseudomonas</i> Isolates Using the <i>rpoD</i> Gene.Microorganisms2020
32284551A suppressor of axillary meristem maturation promotes longevity in flowering plants.Nat Plants2020
32154616Integrative omics analysis of Pseudomonas aeruginosa virus PA5oct highlights the molecular complexity of jumbo phages.Environ Microbiol2020
32132564Author Correction: Canonical germinant receptor is dispensable for spore germination in Clostridium botulinum group II strain NCTC 11219.Sci Rep2020
31058805New Bacteriophages against Emerging Lineages ST23 and ST258 of <i>Klebsiella pneumoniae</i> and Efficacy Assessment in <i>Galleria mellonella</i> Larvae.Viruses2019
31381486Combining sequencing approaches to fully resolve a carbapenemase-encoding megaplasmid in a <i>Pseudomonas shirazica</i> clinical strain.Emerg Microbes Infect2019
31481601A Genome-Based Species Taxonomy of the <i>Lactobacillus</i> Genus Complex.mSystems2019
29124862Catabolic task division between two near-isogenic subpopulations co-existing in a herbicide-degrading bacterial consortium: consequences for the interspecies consortium metabolic model.Environ Microbiol2018
30181345Effects of Acetylation and Phosphorylation on Subunit Interactions in Three Large Eukaryotic Complexes.Mol Cell Proteomics2018
29984394Catabolism of the groundwater micropollutant 2,6-dichlorobenzamide beyond 2,6-dichlorobenzoate is plasmid encoded in Aminobacter sp. MSH1.Appl Microbiol Biotechnol2018
30321192Large-scale docking predicts that sORF-encoded peptides may function through protein-peptide interactions in Arabidopsis thaliana.PLoS One2018
30333148Resurrected Protein Interaction Networks Reveal the Innovation Potential of Ancient Whole-Genome Duplication.Plant Cell2018
29579234Community-led comparative genomic and phenotypic analysis of the aquaculture pathogen Pseudomonas baetica a390T sequenced by Ion semiconductor and Nanopore technologies.FEMS Microbiol Lett2018
27659453Evolutionary conservation of Ebola virus proteins predicts important functions at residue level.Bioinformatics2017
28095775ARA-PEPs: a repository of putative sORF-encoded peptides in Arabidopsis thaliana.BMC Bioinformatics2017
28320309Correlated duplications and losses in the evolution of palmitoylation writer and eraser families.BMC Evol Biol2017
29133849Canonical germinant receptor is dispensable for spore germination in Clostridium botulinum group II strain NCTC 11219.Sci Rep2017
27797766yMap: an automated method to map yeast variants to protein modifications and functional regions.Bioinformatics2017
26773059Integration of multi-omics data of a genome-reduced bacterium: Prevalence of post-transcriptional regulation and its correlation with protein abundances.Nucleic Acids Res2016
27822292UV crosslinked mRNA-binding proteins captured from leaf mesophyll protoplasts.Plant Methods2016
27256313CART-a chemical annotation retrieval toolkit.Bioinformatics2016
25609650Defining a minimal cell: essentiality of small ORFs and ncRNAs in a genome-reduced bacterium.Mol Syst Biol2015
26545090Adaptation to High Ethanol Reveals Complex Evolutionary Pathways.PLoS Genet2015
26299969Lipid Cooperativity as a General Membrane-Recruitment Principle for PH Domains.Cell Rep2015
27308430Discovery and validation of the antimetastatic activity of citalopram in colorectal cancer.Mol Cell Oncol2015
24270602A quantitative liposome microarray to systematically characterize protein-lipid interactions.Nat Methods2014
25398899An integrated approach for genome annotation of the eukaryotic thermophile Chaetomium thermophilum.Nucleic Acids Res2014
25038229Novel drug candidates for the treatment of metastatic colorectal cancer through global inverse gene-expression profiling.Cancer Res2014
25077479Comments on "Human dominant disease genes are enriched in paralogs originating from whole genome duplication".PLoS Comput Biol2014
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Collaborators

Peer Bork
University of Wurzburg
Co-authored papers 24
Anne-Claude Gavin
Co-authored papers 12
Martijn A Huynen
Radboud University Medical Centre Nijmegen
Co-authored papers 10
Murat Iskar
Friedrich Miescher Institute for Biomedical Research
Co-authored papers 8
Berend Snel
Utrecht University
Co-authored papers 7
Georg Zeller
Max Planck Institute for Developmental Biology
Co-authored papers 6
Jeroen Wagemans
Leuven Plant Institute
Co-authored papers 5
Takuji Yamada
Tokyo Institute of Technology
Co-authored papers 3
Marc G??ell
Universitat Pompeu Fabra
Co-authored papers 3
Robert B Russell
Heidelberg University
Co-authored papers 3
Manimozhiyan Arumugam
Novo Nordisk Foundation Center for Basic Metabolic Research, University of Copenhagen
Co-authored papers 3
Albert J R Heck
Utrecht University
Co-authored papers 2
Damien P Devos
Universidad Pablo de Olavide
Co-authored papers 2
Runjun D Kumar
Co-authored papers 2
Jan Ellenberg
Institute of Child Health and Human Development
Co-authored papers 2
Ruedi Aebersold
Institute of Molecular Systems Biology, ETH Zurich
Co-authored papers 1
Robert J Nichols
Stanford University
Co-authored papers 1
Alessandro Ori
Leibniz Institute on Aging - Fritz Lipmann Institute (FLI)
Co-authored papers 1
Nevan J Krogan (CM4AI)
University of California San Francisco
Co-authored papers 1
Thomas Bock
University of Basel
Co-authored papers 1
Lars Hestbjerg Hansen
Co-authored papers 1
Christian Tischer
Center for Bioimage Analysis
Co-authored papers 1
Grier P Page
Genomics and Translational Research Center
Co-authored papers 1
Hendrik G Stunnenberg
Co-authored papers 1
Sabine Schmidt
German Cancer Research Center (DKFZ)
Co-authored papers 1
Martin Beck
Max Planck Institute of Biophysics
Co-authored papers 1
Alexander DeLuna
Centro de Investigacion y de Estudios Avanzados del Instituto Politecnico Nacional
Co-authored papers 1
Giuseppe Jurman
Data Science for Health Research Unit, Bruno Kessler Foundation
Co-authored papers 1
Aedin C Culhane
Dana-Farber Cancer Institute & Harvard School of Public Health
Co-authored papers 1
Emanuele Raineri
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Release 1.2