Skip to Main Content

Author Details

Vsevolod J Makeev
Vavilov Institute of General Genetics, Russian Academy of Sciences
1995
91
27
PMIDPaper TitleJournal TitlePublished Year
37971293HOCOMOCO in 2024: a rebuild of the curated collection of binding models for human and mouse transcription factors.Nucleic Acids Res2024
37971293HOCOMOCO in 2024: a rebuild of the curated collection of binding models for human and mouse transcription factors.Nucleic Acids Res2024
36130228A mitochondria-specific mutational signature of aging: increased rate of A > G substitutions on the heavy strand.Nucleic Acids Res2022
35446421ANANASTRA: annotation and enrichment analysis of allele-specific transcription factor binding at SNPs.Nucleic Acids Res2022
36130228A mitochondria-specific mutational signature of aging: increased rate of A > G substitutions on the heavy strand.Nucleic Acids Res2022
35446421ANANASTRA: annotation and enrichment analysis of allele-specific transcription factor binding at SNPs.Nucleic Acids Res2022
33231677GTRD: an integrated view of transcription regulation.Nucleic Acids Res2021
33980847Landscape of allele-specific transcription factor binding in the human genome.Nat Commun2021
33765281Assessing Ribosome Distribution Along Transcripts with Polarity Scores and Regression Slope Estimates.Methods Mol Biol2021
33231677GTRD: an integrated view of transcription regulation.Nucleic Acids Res2021
35020872Cyclical fate restriction: a new view of neural crest cell fate specification.Development2021
34359791Chromosomal Translocations in NK-Cell Lymphomas Originate from Inter-Chromosomal Contacts of Active rDNA Clusters Possessing Hot Spots of DSBs.Cancers (Basel)2021
33765281Assessing Ribosome Distribution Along Transcripts with Polarity Scores and Regression Slope Estimates.Methods Mol Biol2021
35020872Cyclical fate restriction: a new view of neural crest cell fate specification.Development2021
33980847Landscape of allele-specific transcription factor binding in the human genome.Nat Commun2021
34359791Chromosomal Translocations in NK-Cell Lymphomas Originate from Inter-Chromosomal Contacts of Active rDNA Clusters Possessing Hot Spots of DSBs.Cancers (Basel)2021
32295185Signaling Pathways Potentially Responsible for Foam Cell Formation: Cholesterol Accumulation or Inflammatory Response-What is First?Int J Mol Sci2020
32295185Signaling Pathways Potentially Responsible for Foam Cell Formation: Cholesterol Accumulation or Inflammatory Response-What is First?Int J Mol Sci2020
32393327Insights gained from a comprehensive all-against-all transcription factor binding motif benchmarking study.Genome Biol2020
33138777A holistic view of mouse enhancer architectures reveals analogous pleiotropic effects and correlation with human disease.BMC Genomics2020
33138777A holistic view of mouse enhancer architectures reveals analogous pleiotropic effects and correlation with human disease.BMC Genomics2020
32393327Insights gained from a comprehensive all-against-all transcription factor binding motif benchmarking study.Genome Biol2020
30643692Defensin-like peptides in wheat analyzed by whole-transcriptome sequencing: a focus on structural diversity and role in induced resistance.PeerJ2019
31737053What Do Neighbors Tell About You: The Local Context of Cis-Regulatory Modules Complicates Prediction of Regulatory Variants.Front Genet2019
30643692Defensin-like peptides in wheat analyzed by whole-transcriptome sequencing: a focus on structural diversity and role in induced resistance.PeerJ2019
31500189Heteroplasmic Variants of Mitochondrial DNA in Atherosclerotic Lesions of Human Aortic Intima.Biomolecules2019
30863681Employing toxin-antitoxin genome markers for identification of <i>Bifidobacterium</i> and <i>Lactobacillus</i> strains in human metagenomes.PeerJ2019
31737053What Do Neighbors Tell About You: The Local Context of Cis-Regulatory Modules Complicates Prediction of Regulatory Variants.Front Genet2019
31500189Heteroplasmic Variants of Mitochondrial DNA in Atherosclerotic Lesions of Human Aortic Intima.Biomolecules2019
30863681Employing toxin-antitoxin genome markers for identification of <i>Bifidobacterium</i> and <i>Lactobacillus</i> strains in human metagenomes.PeerJ2019
28024445Role of structural water for prediction of cation binding sites in apoproteins.J Biomol Struct Dyn2018
33250120The complete genome of the oil emulsifying strain Thalassolituus oleivorans K-188 from the Barents Sea.Mar Genomics2018
30118702HDL activates expression of genes stimulating cholesterol efflux in human monocyte-derived macrophages.Exp Mol Pathol2018
30352610Genome-wide map of human and mouse transcription factor binding sites aggregated from ChIP-Seq data.BMC Res Notes2018
30205792Modified LDL Particles Activate Inflammatory Pathways in Monocyte-derived Macrophages: Transcriptome Analysis.Curr Pharm Des2018
29140464HOCOMOCO: towards a complete collection of transcription factor binding models for human and mouse via large-scale ChIP-Seq analysis.Nucleic Acids Res2018
28024445Role of structural water for prediction of cation binding sites in apoproteins.J Biomol Struct Dyn2018
33250120The complete genome of the oil emulsifying strain Thalassolituus oleivorans K-188 from the Barents Sea.Mar Genomics2018
30205792Modified LDL Particles Activate Inflammatory Pathways in Monocyte-derived Macrophages: Transcriptome Analysis.Curr Pharm Des2018
30118702HDL activates expression of genes stimulating cholesterol efflux in human monocyte-derived macrophages.Exp Mol Pathol2018
30352610Genome-wide map of human and mouse transcription factor binding sites aggregated from ChIP-Seq data.BMC Res Notes2018
29140464HOCOMOCO: towards a complete collection of transcription factor binding models for human and mouse via large-scale ChIP-Seq analysis.Nucleic Acids Res2018
28829439An integrated expression atlas of miRNAs and their promoters in human and mouse.Nat Biotechnol2017
28829439An integrated expression atlas of miRNAs and their promoters in human and mouse.Nat Biotechnol2017
28234966The single nucleotide variant rs12722489 determines differential estrogen receptor binding and enhancer properties of an IL2RA intronic region.PLoS One2017
28124601Use of Primary Macrophages for Searching Novel Immunocorrectors.Curr Pharm Des2017
28124601Use of Primary Macrophages for Searching Novel Immunocorrectors.Curr Pharm Des2017
28234966The single nucleotide variant rs12722489 determines differential estrogen receptor binding and enhancer properties of an IL2RA intronic region.PLoS One2017
27005429Preservation of methylated CpG dinucleotides in human CpG islands.Biol Direct2016
27005429Preservation of methylated CpG dinucleotides in human CpG islands.Biol Direct2016
  • 1 - 50 of 182

Recommended Authors

Sarath Chandra Janga
Indiana University
Career Start Year 2004
Number of shared co-authors 0
Valer Gotea
National Human Genome Research Institute, National Institutes of Health
Career Start Year 2003
Number of shared co-authors 0
Ying Xu
The China-Japan Union Hospital, Jilin University
Career Start Year 2002
Number of shared co-authors 0
Zhaolei Zhang
University of Toronto
Career Start Year 2002
Number of shared co-authors 0
Madan Mohan Babu
St. Jude Children's Research Hospital
Career Start Year 2002
Number of shared co-authors 45
Jun Yu
Beijing Institute of Genomics, Chinese Academy of Sciences
Career Start Year 2001
Number of shared co-authors 2
Ian Korf
University of California davis
Career Start Year 1998
Number of shared co-authors 5
Panayiotis V Benos
University of Florida
Career Start Year 1996
Number of shared co-authors 1
Michele Caselle
University of Turin and INFN
Career Start Year 1995
Number of shared co-authors 0
Dirk Walther
Max Planck Institute of Molecular Plant Physiology
Career Start Year 1995
Number of shared co-authors 0
Ron Shamir
Tel Aviv University
Career Start Year 1995
Number of shared co-authors 1
Ralf Zimmer
Ludwig-Maximilians-Universitat Munchen
Career Start Year 1995
Number of shared co-authors 0
Terry Gaasterland
Scripps Institution of Oceanography, University of California San Diego
Career Start Year 1994
Number of shared co-authors 27
Hideo Matsuda
Osaka University
Career Start Year 1994
Number of shared co-authors 73
Emanuele Raineri
Barcelona Institute of Science and Technology (BIST)
Career Start Year 1993
Number of shared co-authors 0
Simon Kasif
Boston University
Career Start Year 1993
Number of shared co-authors 4
Tao Jiang
University of California riverside
Career Start Year 1992
Number of shared co-authors 0
Ewan Birney
European Bioinformatics Institute
Career Start Year 1992
Number of shared co-authors 42
Timothy R Hughes
University of Toronto
Career Start Year 1992
Number of shared co-authors 4
Mark Gerstein
Yale University
Career Start Year 1991
Number of shared co-authors 13
Miguel A Andrade-Navarro
Institute of Organismic and Molecular Evolution, Johannes Gutenberg University
Career Start Year 1991
Number of shared co-authors 3
Samuel Levy
Bluestar Genomics Inc.
Career Start Year 1991
Number of shared co-authors 1
Peer Bork
University of Wurzburg
Career Start Year 1989
Number of shared co-authors 14
Rintaro Saito
Institute for Advanced Biosciences, Keio University
Career Start Year 1988
Number of shared co-authors 67
Michael B Eisen
Howard Hughes Medical Institute, University of California Berkeley
Career Start Year 1988
Number of shared co-authors 8
David Haussler
Genomics Institute, University of California Santa Cruz
Career Start Year 1986
Number of shared co-authors 9
Luciano Milanesi
Institute of Biomedical Technologies - National Research Council of Italy
Career Start Year 1982
Number of shared co-authors 0
Gary D Stormo
Washington University in St. Louis
Career Start Year 1981
Number of shared co-authors 3
Joaqu??n Dopazo
Andalusian Public Foundation Progress and Health-FPS
Career Start Year 1977
Number of shared co-authors 3
Michael S Waterman
Biocomplexity Institute and Initiative
Career Start Year 1977
Number of shared co-authors 0

Collaborators

Ivan V Kulakovskiy
Vavilov Institute of General Genetics, Russian Academy of Sciences
Co-authored papers 28
Ilya E Vorontsov
Vavilov Institute of General Genetics, Russian Academy of Sciences
Co-authored papers 16
Yulia A Medvedeva
Research Center of Biotechnology RAS, Russian Academy of Sciences
Co-authored papers 13
Artem S Kasianov
Institute for Information Transmission Problems of the Russian Academy of Sciences
Co-authored papers 12
Alexander V Favorov
Johns Hopkins School of Medicine
Co-authored papers 11
Andrey A Mironov
Lomonosov Moscow State University
Co-authored papers 7
Dmitri Papatsenko
Co-authored papers 6
Guido K W Frank
University of California
Co-authored papers 6
Vladimir B Bajic
King Abdullah University of Science and Technology (KAUST)
Co-authored papers 4
Mireille Régnier
Co-authored papers 4
Alexander Kel
Co-authored papers 3
Carsten O Daub
International Institute of Molecular and Cell Biology in Warsaw
Co-authored papers 2
Takeya Kasukawa
RIKEN Center for Integrative Medical Sciences
Co-authored papers 2
Kim M Summers
Mater Research Institute-University of Queensland, Translational Research Institute
Co-authored papers 2
Jayson Harshbarger
RIKEN Center for Integrative Medical Sciences
Co-authored papers 2
Marina Lizio
Cerevance Ltd
Co-authored papers 2
Mitsuhiro Ohshima
Ohu University School of Pharmaceutical Sciences
Co-authored papers 2
Piero Carninci
RIKEN Center for Integrative Medical Sciences
Co-authored papers 2
Misako Yoneda
Institute of Industrial Science, The University of Tokyo
Co-authored papers 2
Martin C Frith
Artificial Intelligence Research Center, University of Tokyo
Co-authored papers 2
Svend Peter Klinken
Harry Perkins Institute of Medical Research
Co-authored papers 2
Akira Hasegawa
RIKEN Center for Integrative Medical Sciences
Co-authored papers 2
Jay W Shin
Genome Institute of Singapore (GIS)
Co-authored papers 2
Alistair R R Forrest
RIKEN Center for Integrative Medical Sciences
Co-authored papers 2
Hideya Kawaji
RIKEN Center for Integrative Medical Sciences
Co-authored papers 2
Michael Detmar
Institute of Pharmaceutical Sciences, ETH Zurich
Co-authored papers 2
Peter Zhang
Child and Family Research Institute, University of British Columbia
Co-authored papers 2
Dan Goldowitz
University of British Columbia
Co-authored papers 2
Peter Heutink
German Center for Neurodegenerative Diseases (DZNE).
Co-authored papers 2
Weonju Lee
Kyungpook National University, Kyungpook National University Hospital
Co-authored papers 2
Release 1.2