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Author Details

Ritu Roy
University of California San Francisco.
2007
58
30
Nevan J Krogan (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36700399Venetoclax and dinaciclib elicit synergistic preclinical efficacy against hypodiploid acute lymphoblastic leukemia.Haematologica2023
37292835Multiomic Single Cell Sequencing Identifies Stemlike Nature of Mixed Phenotype Acute Leukemia and Provides Novel Risk Stratification.bioRxiv2023
36945384Torch-eCpG: A fast and scalable eQTM mapper for thousands of molecular phenotypes with graphical processing units.bioRxiv2023
37039882Prediction of morning fatigue severity in outpatients receiving chemotherapy: less may still be more.Support Care Cancer2023
36857322Therapeutic implications of transcriptomics in head and neck cancer patient-derived xenografts.PLoS One2023
34249477Prediction of evening fatigue severity in outpatients receiving chemotherapy: less may be more.Fatigue2021
33547282The genome-wide impact of trisomy 21 on DNA methylation and its implications for hematopoiesis.Nat Commun2021
34546978Caveolin-1 and Sox-2 are predictive biomarkers of cetuximab response in head and neck cancer.JCI Insight2021
32139107Next-Generation Sequencing of Retinoblastoma Identifies Pathogenic Alterations beyond RB1 Inactivation That Correlate with Aggressive Histopathologic Features.Ophthalmology2020
31687977Glucocorticoids paradoxically facilitate steroid resistance in T cell acute lymphoblastic leukemias and thymocytes.J Clin Invest2020
32946981Human pediatric B-cell acute lymphoblastic leukemias can be classified as B-1 or B-2-like based on a minimal transcriptional signature.Exp Hematol2020
30538091Autocrine TGFβ Is a Survival Factor for Monocytes and Drives Immunosuppressive Lineage Commitment.Cancer Immunol Res2019
30870065Epigenomic profiling of newborns with isolated orofacial clefts reveals widespread DNA methylation changes and implicates metastable epiallele regions in disease risk.Epigenetics2019
31015461Meta-analysis of epigenome-wide association studies in neonates reveals widespread differential DNA methylation associated with birthweight.Nat Commun2019
31024753Next-Generation Sequencing of Uveal Melanoma for Detection of Genetic Alterations Predicting Metastasis.Transl Vis Sci Technol2019
29025028Cohort Profile: Pregnancy And Childhood Epigenetics (PACE) Consortium.Int J Epidemiol2018
30211312Genomic and expression profiling reveal molecular heterogeneity of disseminated tumor cells in bone marrow of early breast cancer.NPJ Breast Cancer2018
29396395Replication confers β cell immaturity.Nat Commun2018
29311117Expanded Genomic Profiling of Circulating Tumor Cells in Metastatic Breast Cancer Patients to Assess Biomarker Status and Biology Over Time (CALGB 40502 and CALGB 40503, Alliance).Clin Cancer Res2018
27576874Association of early changes in 1H MRSI parameters with survival for patients with newly diagnosed glioblastoma receiving a multimodality treatment regimen.Neuro Oncol2017
28184256Immunomethylomic approach to explore the blood neutrophil lymphocyte ratio (NLR) in glioma survival.Clin Epigenetics2017
28202519Correlates of Prenatal and Early-Life Tobacco Smoke Exposure and Frequency of Common Gene Deletions in Childhood Acute Lymphoblastic Leukemia.Cancer Res2017
28942218Characterization of Metabolic, Diffusion, and Perfusion Properties in GBM: Contrast-Enhancing versus Non-Enhancing Tumor.Transl Oncol2017
29016858Maternal BMI at the start of pregnancy and offspring epigenome-wide DNA methylation: findings from the pregnancy and childhood epigenetics (PACE) consortium.Hum Mol Genet2017
27403598Genetic contribution to variation in DNA methylation at maternal smoking-sensitive loci in exposed neonates.Epigenetics2016
26585352Associations between circulating carotenoids, genomic instability and the risk of high-grade prostate cancer.Prostate2016
27535746Serial analysis of 3D H-1 MRSI for patients with newly diagnosed GBM treated with combination therapy that includes bevacizumab.J Neurooncol2016
27343980An improved CTC isolation scheme for pairing with downstream genomics: Demonstrating clinical utility in metastatic prostate, lung and pancreatic cancer.Cancer Lett2016
25690899Epigenetic remodeling in B-cell acute lymphoblastic leukemia occurs in two tracks and employs embryonic stem cell-like signatures.Nucleic Acids Res2015
26646725Periconceptional folate consumption is associated with neonatal DNA methylation modifications in neural crest regulatory and cancer development genes.Epigenetics2015
26343386Exome sequencing of desmoplastic melanoma identifies recurrent NFKBIE promoter mutations and diverse activating mutations in the MAPK pathway.Nat Genet2015
26692525Association of Diffusion and Anatomic Imaging Parameters with Survival for Patients with Newly Diagnosed Glioblastoma Participating in Two Different Clinical Trials.Transl Oncol2015
26088929Transcription and methylation analyses of preleukemic promyelocytes indicate a dual role for PML/RARA in leukemia initiation.Haematologica2015
24496747PTPRG inhibition by DNA methylation and cooperation with RAS gene activation in childhood acute lymphoblastic leukemia.Int J Cancer2014
26484071Genome-wide copy number analysis of cerebrospinal fluid tumor cells and their corresponding archival primary tumors.Genom Data2014
24812125Genetic variants of Adam17 differentially regulate TGFβ signaling to modify vascular pathology in mice and humans.Proc Natl Acad Sci U S A2014
23135909Genomic profiling of isolated circulating tumor cells from metastatic breast cancer patients.Cancer Res2013
24142343Molecular profiling of tumor cells in cerebrospinal fluid and matched primary tumors from metastatic breast cancer patients with leptomeningeal carcinomatosis.Cancer Res2013
23809857Florid lobular carcinoma in situ: molecular profiling and comparison to classic lobular carcinoma in situ and pleomorphic lobular carcinoma in situ.Hum Pathol2013
22158653Common structural and epigenetic changes in the genome of castration-resistant prostate cancer.Cancer Res2012
23552698Genomic copy number alterations in clear cell renal carcinoma: associations with case characteristics and mechanisms of VHL gene inactivation.Oncogenesis2012
22956585Diversity of antigen-specific responses induced in vivo with CTLA-4 blockade in prostate cancer patients.J Immunol2012
22766796Regulators of skeletal development: a cluster analysis of 206 bone tumors reveals diagnostically useful markers.Mod Pathol2012
22233626Mouse and human strategies identify PTPN14 as a modifier of angiogenesis and hereditary haemorrhagic telangiectasia.Nat Commun2012
21496874Genomic alterations and phenotype of large compared to small high-grade ductal carcinoma in situ.Hum Pathol2011
22068658Two distinct routes to oral cancer differing in genome instability and risk for cervical node metastasis.Clin Cancer Res2011
21912659Gene expression and biological pathways in tissue of men with prostate cancer in a randomized clinical trial of lycopene and fish oil supplementation.PLoS One2011
19995795Loss of Blm enhances basal cell carcinoma and rhabdomyosarcoma tumorigenesis in Ptch1+/- mice.Carcinogenesis2010
21083380Mutations in GNA11 in uveal melanoma.N Engl J Med2010
20874733Genetic and morphologic features for melanoma classification.Pigment Cell Melanoma Res2010
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Collaborators

Adam B Olshen
12224University of California san francisco
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Annette M Molinaro
Co-authored papers 5
Lucas A Salas
Geisel School of Medicine, Dartmouth College
Co-authored papers 3
George Davey Smith
University of Bristol
Co-authored papers 3
Margaret R Karagas
Co-authored papers 3
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Co-authored papers 3
Marie-France Hivert
Co-authored papers 3
Stephanie J London
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Emily Oken
Co-authored papers 3
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University of California san francisco
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Margaret Daniele Fallin
Co-authored papers 3
Aaron Hechmer
University of California san francisco
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Soonmee Cha
Co-authored papers 3
Zdenko Herceg
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Harold Snieder
University of Groningen, University Medical Center Groningen
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Mailman School of Public Health, Columbia University
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Caroline L Relton
University of Bristol
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Folkhalsan Research Center, University of Helsinki
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John Wright
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Catherine Allard
Co-authored papers 2
Daniel E Johnson
University of California San Francisco
Co-authored papers 2
Jennifer R Grandis
University of California san francisco
Co-authored papers 2
Allan C Just
Co-authored papers 2
Irva Hertz-Picciotto
The MIND Institute, University of California davis
Co-authored papers 2
Lisa A Croen
Co-authored papers 2
Carrie V Breton
Co-authored papers 2
Eric J Small
University of California san francisco
Co-authored papers 2
Michael D Prados
University of California san francisco
Co-authored papers 2
Release 1.2