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Author Details

John C Marioni
Cancer Research UK Cambridge Institute, University of Cambridge
2004
158
72
Emma Lundberg (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
37231260Stabilized mosaic single-cell data integration using unshared features.Nat Biotechnol2024
37231260Stabilized mosaic single-cell data integration using unshared features.Nat Biotechnol2024
36493780Organoid modeling of human fetal lung alveolar development reveals mechanisms of cell fate patterning and neonatal respiratory disease.Cell Stem Cell2023
37590359Yolk sac cell atlas reveals multiorgan functions during human early development.Science2023
37828140Precise identification of cell states altered in disease using healthy single-cell references.Nat Genet2023
37986877A spatial human thymus cell atlas mapped to a continuous tissue axis.bioRxiv2023
37636454Time-resolved single-cell RNAseq profiling identifies a novel <i>Fabp5</i><sup>+</sup> subpopulation of inflammatory myeloid cells with delayed cytotoxic profile in chronic spinal cord injury.Heliyon2023
37709743Time space and single-cell resolved tissue lineage trajectories and laterality of body plan at gastrulation.Nat Commun2023
37550580Unsupervised removal of systematic background noise from droplet-based single-cell experiments using CellBender.Nat Methods2023
37860838Cytotoxic T lymphocytes require transcription for infiltration but not target cell lysis.EMBO Rep2023
37217306Origin and segregation of the human germline.Life Sci Alliance2023
36493780Organoid modeling of human fetal lung alveolar development reveals mechanisms of cell fate patterning and neonatal respiratory disease.Cell Stem Cell2023
36945506Sensitive cluster-free differential expression testing.bioRxiv2023
37322291An atlas of rabbit development as a model for single-cell comparative genomics.Nat Cell Biol2023
37308670Mapping interindividual dynamics of innate immune response at single-cell resolution.Nat Genet2023
36669486Base editing screens map mutations affecting interferon-γ signaling in cancer.Cancer Cell2023
37499658A transcriptional and regulatory map of mouse somite maturation.Dev Cell2023
37636454Time-resolved single-cell RNAseq profiling identifies a novel <i>Fabp5</i><sup>+</sup> subpopulation of inflammatory myeloid cells with delayed cytotoxic profile in chronic spinal cord injury.Heliyon2023
37860838Cytotoxic T lymphocytes require transcription for infiltration but not target cell lysis.EMBO Rep2023
37709743Time space and single-cell resolved tissue lineage trajectories and laterality of body plan at gastrulation.Nat Commun2023
37590359Yolk sac cell atlas reveals multiorgan functions during human early development.Science2023
37550580Unsupervised removal of systematic background noise from droplet-based single-cell experiments using CellBender.Nat Methods2023
37986877A spatial human thymus cell atlas mapped to a continuous tissue axis.bioRxiv2023
37828140Precise identification of cell states altered in disease using healthy single-cell references.Nat Genet2023
37499658A transcriptional and regulatory map of mouse somite maturation.Dev Cell2023
37322291An atlas of rabbit development as a model for single-cell comparative genomics.Nat Cell Biol2023
37217306Origin and segregation of the human germline.Life Sci Alliance2023
36945506Sensitive cluster-free differential expression testing.bioRxiv2023
37308670Mapping interindividual dynamics of innate immune response at single-cell resolution.Nat Genet2023
36669486Base editing screens map mutations affecting interferon-γ signaling in cancer.Cancer Cell2023
34594043Differential abundance testing on single-cell data using k-nearest neighbor graphs.Nat Biotechnol2022
35972065CellRegMap: a statistical framework for mapping context-specific regulatory variants using scRNA-seq.Mol Syst Biol2022
36163261Single-cell multi-omics profiling links dynamic DNA methylation to cell fate decisions during mouse early organogenesis.Genome Biol2022
35817961Mesp1 controls the chromatin and enhancer landscapes essential for spatiotemporal patterning of early cardiovascular progenitors.Nat Cell Biol2022
36121125SOX9 maintains human foetal lung tip progenitor state by enhancing WNT and RTK signalling.EMBO J2022
36459969A reference human induced pluripotent stem cell line for large-scale collaborative studies.Cell Stem Cell2022
34850121Expression Atlas update: gene and protein expression in multiple species.Nucleic Acids Res2022
34782740Locus-specific expression of transposable elements in single cells with CELLO-seq.Nat Biotechnol2022
34594043Differential abundance testing on single-cell data using k-nearest neighbor graphs.Nat Biotechnol2022
35224470Coagulation factor V is a T-cell inhibitor expressed by leukocytes in COVID-19.iScience2022
35817961Mesp1 controls the chromatin and enhancer landscapes essential for spatiotemporal patterning of early cardiovascular progenitors.Nat Cell Biol2022
36459969A reference human induced pluripotent stem cell line for large-scale collaborative studies.Cell Stem Cell2022
35972065CellRegMap: a statistical framework for mapping context-specific regulatory variants using scRNA-seq.Mol Syst Biol2022
36163261Single-cell multi-omics profiling links dynamic DNA methylation to cell fate decisions during mouse early organogenesis.Genome Biol2022
36121125SOX9 maintains human foetal lung tip progenitor state by enhancing WNT and RTK signalling.EMBO J2022
35224470Coagulation factor V is a T-cell inhibitor expressed by leukocytes in COVID-19.iScience2022
34850121Expression Atlas update: gene and protein expression in multiple species.Nucleic Acids Res2022
34782740Locus-specific expression of transposable elements in single cells with CELLO-seq.Nat Biotechnol2022
33414188Characterization of a common progenitor pool of the epicardium and myocardium.Science2021
33686070Time-resolved single-cell analysis of Brca1 associated mammary tumourigenesis reveals aberrant differentiation of luminal progenitors.Nat Commun2021
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Collaborators

Sarah A Teichmann
Wellcome Sanger Institute
Co-authored papers 24
Oliver Stegle
Wellcome Sanger Institute
Co-authored papers 16
Berthold Göttgens
Co-authored papers 16
Duncan T Odom
Cancer Research UK Cambridge Institute, University of Cambridge
Co-authored papers 14
Simon Tavar??
Irving Institute for Cancer Dynamics, Columbia University
Co-authored papers 12
Alvis Brazma
European Bioinformatics Institute
Co-authored papers 10
Wolf Reik
The Babraham Institute
Co-authored papers 9
Paul Flicek
European Bioinformatics Institute
Co-authored papers 9
Nuno A Fonseca
European Bioinformatics Institute
Co-authored papers 6
Thierry Voet
KU Leuven Institute for Single Cell Omics (LISCO)
Co-authored papers 6
Iain C Macaulay
Co-authored papers 6
Carlos Caldas
Cancer Research UK Cambridge Institute, University of Cambridge
Co-authored papers 5
Muzlifah Haniffa
Wellcome Sanger Institute
Co-authored papers 5
Fabian J Theis
Technical University of Munich
Co-authored papers 5
Matthew Stephens
University of Chicago
Co-authored papers 5
Andy G Lynch
University of St Andrews
Co-authored papers 5
Ricard Argelaguet
European Bioinformatics Institute (EMBL-EBI)
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Center for Genomics and Systems Biology, New York University
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Mar Gonz??lez-Porta
Illumina Cambridge Ltd
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Jonathan K Pritchard
Co-authored papers 4
Magdalena Zernicka-Goetz
California Institute of Technology, USA. institute of technology.edu.
Co-authored papers 3
M A Surani
The Gurdon Institute
Co-authored papers 3
Christina Curtis
Stanford University School of Medicine
Co-authored papers 3
Helen Parkinson
European Bioinformatics Institute
Co-authored papers 3
Ido Amit
Weizmann Institute of Science
Co-authored papers 3
Ana Pombo
Polytechnic Institute of Leiria
Co-authored papers 3
Silvie Fexova
Co-authored papers 3
Chris P Ponting
The University of Edinburgh
Co-authored papers 3
Hans Clevers
Princess Maxima Center for Pediatric Oncology
Co-authored papers 3
Release 1.2