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Author Details

Rachel R Ogorzalek Loo
university of california los angeles
1991
112
40
Emma Lundberg (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
37198174Elucidating the molecular programming of a nonlinear non-ribosomal peptide synthetase responsible for fungal siderophore biosynthesis.Nat Commun2023
37801475Structure-based design of nanobodies that inhibit seeding of Alzheimer's patient-extracted tau fibrils.Proc Natl Acad Sci U S A2023
37936057Characterization of Molecular Tweezer Binding on α-Synuclein with Native Top-Down Mass Spectrometry and Ion Mobility-Mass Spectrometry Reveals a Mechanism for Aggregation Inhibition.J Am Soc Mass Spectrom2023
37278738Added Value of Internal Fragments for Top-Down Mass Spectrometry of Intact Monoclonal Antibodies and Antibody-Drug Conjugates.Anal Chem2023
35063165Towards understanding the formation of internal fragments generated by collisionally activated dissociation for top-down mass spectrometry.Anal Chim Acta2022
35344984Amyloid fibrils in FTLD-TDP are composed of TMEM106B and not TDP-43.Nature2022
36441927Native Top-Down Mass Spectrometry with Collisionally Activated Dissociation Yields Higher-Order Structure Information for Protein Complexes.J Am Chem Soc2022
36399030Top-down mass spectrometry and assigning internal fragments for determining disulfide bond positions in proteins.Analyst2022
36419437Dynamic acylome reveals metabolite driven modifications in <i>Syntrophomonas wolfei</i>.Front Microbiol2022
36113135On the Mechanism of Theta Capillary Nanoelectrospray Ionization for the Formation of Highly Charged Protein Ions Directly from Native Solutions.Anal Chem2022
35189333The Acyl-Proteome of Syntrophus aciditrophicus Reveals Metabolic Relationships in Benzoate Degradation.Mol Cell Proteomics2022
32896103Leveraging Immonium Ions for Targeting Acyl-Lysine Modifications in Proteomic Datasets.Proteomics2021
33650866ClipsMS: An Algorithm for Analyzing Internal Fragments Resulting from Top-Down Mass Spectrometry.J Proteome Res2021
34101447Internal Fragments Generated from Different Top-Down Mass Spectrometry Fragmentation Methods Extend Protein Sequence Coverage.J Am Soc Mass Spectrom2021
32396336Kinetics and Optimization of the Lysine-Isopeptide Bond Forming Sortase Enzyme from <i>Corynebacterium diphtheriae</i>.Bioconjug Chem2020
31658406N-terminal autoprocessing and acetylation of multifunctional-autoprocessing repeats-in-toxins (MARTX) Makes Caterpillars Floppy-like effector is stimulated by adenosine diphosphate (ADP)-Ribosylation Factor 1 in advance of Golgi fragmentation.Cell Microbiol2020
32799534Internal Fragments Generated by Electron Ionization Dissociation Enhance Protein Top-Down Mass Spectrometry.J Am Soc Mass Spectrom2020
32538093PEPPI-MS: Polyacrylamide-Gel-Based Prefractionation for Analysis of Intact Proteoforms and Protein Complexes by Mass Spectrometry.J Proteome Res2020
30895699Syntrophus aciditrophicus uses the same enzymes in a reversible manner to degrade and synthesize aromatic and alicyclic acids.Environ Microbiol2019
31070026Biosample Concentration Using Microscale Forward Osmosis with Electrochemical Monitoring.Anal Chem2019
29796970Stabilizing displayed proteins on vegetative Bacillus subtilis cells.Appl Microbiol Biotechnol2018
29927249Protein Labeling via a Specific Lysine-Isopeptide Bond Using the Pilin Polymerizing Sortase from Corynebacterium diphtheriae.J Am Chem Soc2018
29844180In vitro reconstitution of sortase-catalyzed pilus polymerization reveals structural elements involved in pilin cross-linking.Proc Natl Acad Sci U S A2018
30602943Proteomics identification of radiation-induced changes of membrane proteins in the rat model of arteriovenous malformation in pursuit of targets for brain AVM molecular therapy.Clin Proteomics2018
29359744An integrated native mass spectrometry and top-down proteomics method that connects sequence to structure and function of macromolecular complexes.Nat Chem2018
29750076Enhancing Sensitivity of Liquid Chromatography-Mass Spectrometry of Peptides and Proteins Using Supercharging Agents.Int J Mass Spectrom2018
29443976How many human proteoforms are there?Nat Chem Biol2018
28522939Identification of protein targets in cerebral endothelial cells for brain arteriovenous malformation (AVMs) molecular therapies.Clin Proteomics2017
28188519Improving Proteome Coverage and Sample Recovery with Enhanced FASP (eFASP) for Quantitative Proteomic Experiments.Methods Mol Biol2017
28376248Keystone predation and molecules of keystone significance.Ecology2017
28755259Structural Characterization of a Thrombin-Aptamer Complex by High Resolution Native Top-Down Mass Spectrometry.J Am Soc Mass Spectrom2017
28729461Morphology of the archaellar motor and associated cytoplasmic cone in <i>Thermococcus kodakaraensis</i>.EMBO Rep2017
28723075Top-down/Bottom-up Mass Spectrometry Workflow Using Dissolvable Polyacrylamide Gels.Anal Chem2017
27052739Salt Bridge Rearrangement (SaBRe) Explains the Dissociation Behavior of Noncovalent Complexes.J Am Soc Mass Spectrom2016
27881975Membrane Complexes of <i>Syntrophomonas wolfei</i> Involved in Syntrophic Butyrate Degradation and Hydrogen Formation.Front Microbiol2016
28004660Corrigendum: CryoEM structure of the Methanospirillum hungatei archaellum reveals structural features distinct from the bacterial flagellum and type IV pilus.Nat Microbiol2016
27922015CryoEM structure of the Methanospirillum hungatei archaellum reveals structural features distinct from the bacterial flagellum and type IV pilus.Nat Microbiol2016
27531911Pyrophosphate-Dependent ATP Formation from Acetyl Coenzyme A in Syntrophus aciditrophicus, a New Twist on ATP Formation.mBio2016
27044025Focus on Mass Spectrometry as a Probe of Higher Order Protein Structure, Honoring Prof. Brian T. Chait, Recipient of the 2015 ASMS Award for a Distinguished Contribution in Mass Spectrometry : Editorial: A Turning Point for Biological Mass Spectrometry.J Am Soc Mass Spectrom2016
26826592Combining high-throughput MALDI-TOF mass spectrometry and isoelectric focusing gel electrophoresis for virtual 2D gel-based proteomics.Methods2016
25798134Mining proteomic data to expose protein modifications in Methanosarcina mazei strain Gö1.Front Microbiol2015
26644781Enhancing Protein Disulfide Bond Cleavage by UV Excitation and Electron Capture Dissociation for Top-Down Mass Spectrometry.Int J Mass Spectrom2015
26472759Structure of Tetrahymena telomerase reveals previously unknown subunits, functions, and interactions.Science2015
26085103Mia40 Protein Serves as an Electron Sink in the Mia40-Erv1 Import Pathway.J Biol Chem2015
26028988Increasing Fragmentation of Disulfide-Bonded Proteins for Top-Down Mass Spectrometry by Supercharging.Int J Mass Spectrom2015
24678615Addressing the needs of traumatic brain injury with clinical proteomics.Clin Proteomics2014
25380495Radical-directed dissociation of peptides and proteins by infrared multiphoton dissociation and sustained off-resonance irradiation collision-induced dissociation with Fourier transform ion cyclotron resonance mass spectrometry.Rapid Commun Mass Spectrom2014
25135609What protein charging (and supercharging) reveal about the mechanism of electrospray ionization.J Am Soc Mass Spectrom2014
24912433Revealing ligand binding sites and quantifying subunit variants of noncovalent protein complexes in a single native top-down FTICR MS experiment.J Am Soc Mass Spectrom2014
24552128Enhanced FASP (eFASP) to increase proteome coverage and sample recovery for quantitative proteomic experiments.J Proteome Res2014
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Collaborators

Joseph A Loo
University of California los angeles
Co-authored papers 90
Richard D Smith
Pacific Northwest National Laboratory
Co-authored papers 9
Philip C Andrews
Sydney Children's Hospital, University of New South Wales
Co-authored papers 8
Zhen-Hong Zhou
Co-authored papers 3
Julian P Whitelegge
Co-authored papers 2
David Eisenberg
university of california los angeles
Co-authored papers 2
Duilio Cascio
Co-authored papers 2
Kym F Faull
Co-authored papers 2
Sonya E Neal
University of California San Diego, United States Howard Hughes Medical Institute
Co-authored papers 2
Neil L Kelleher
Northwestern University
Co-authored papers 2
Benjamin A Garcia
University of Pennsylvania
Co-authored papers 2
Nathan A Yates
University of Pittsburgh School of Medicine
Co-authored papers 1
Therese Wohlschlager
University of Salzburg
Co-authored papers 1
Michael C Jewett
Northwestern University
Co-authored papers 1
Nevan J Krogan (CM4AI)
University of California San Francisco
Co-authored papers 1
C David Allis
The Rockefeller University
Co-authored papers 1
Carolyn R Bertozzi
Stanford University
Co-authored papers 1
Ole N Jensen
VILLUM Center for Bioanalytical Sciences, University of Southern Denmark
Co-authored papers 1
Nicolas L Young
Baylor College of Medicine, USA Center for Precision Environmental Health
Co-authored papers 1
Mark S Baker
Macquarie University
Co-authored papers 1
Richard K Niles
Co-authored papers 1
Jeffrey Shabanowitz
University of Virginia
Co-authored papers 1
Sharon J Pitteri
Stanford University
Co-authored papers 1
Jeremy Gunawardena
Harvard Medical School
Co-authored papers 1
David R Walt
Brigham and Women's Hospital
Co-authored papers 1
Edward H Egelman
University of Virginia
Co-authored papers 1
Alexander R Ivanov
Barnett Institute of Chemical and Biological Analysis, Northeastern University
Co-authored papers 1
Heather E Upton
University of California berkeley
Co-authored papers 1
Michael J MacCoss
University of Washington
Co-authored papers 1
Vitold E Galkin
Eastern Virginia Medical School
Co-authored papers 1
Release 1.2