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Author Details

Gene W Yeo
University of California
2004
259
82
Emma Lundberg (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
37745562circHIPK3 nucleates IGF2BP2 and functions as a competing endogenous RNA.bioRxiv2024
37745562circHIPK3 nucleates IGF2BP2 and functions as a competing endogenous RNA.bioRxiv2024
36321651RBP Image Database: A resource for the systematic characterization of the subcellular distribution properties of human RNA binding proteins.Nucleic Acids Res2023
36321651RBP Image Database: A resource for the systematic characterization of the subcellular distribution properties of human RNA binding proteins.Nucleic Acids Res2023
37751740RANK ligand converts the NCoR/HDAC3 co-repressor to a PGC1β- and RNA-dependent co-activator of osteoclast gene expression.Mol Cell2023
37673892A super-enhancer-regulated RNA-binding protein cascade drives pancreatic cancer.Nat Commun2023
37662229Stratification of enterochromaffin cells by single-cell expression analysis.bioRxiv2023
37739431Seryl-tRNA synthetase promotes translational readthrough by mRNA binding and involvement of the selenocysteine incorporation machinery.Nucleic Acids Res2023
37587337Xiphoid nucleus of the midline thalamus controls cold-induced food seeking.Nature2023
37917746Junior scientists spotlight social bonds in seminars for diversity, equity, and inclusion in STEM.PLoS One2023
37808757Expanded palette of RNA base editors for comprehensive RBP-RNA interactome studies.bioRxiv2023
37790334A phage nucleus-associated RNA-binding protein is required for jumbo phage infection.bioRxiv2023
37784060FLARE: a fast and flexible workflow for identifying RNA editing foci.BMC Bioinformatics2023
37873158Localized synthesis of molecular chaperones sustains neuronal proteostasis.bioRxiv2023
36716323Early transcriptional and epigenetic divergence of CD8+ T cells responding to acute versus chronic infection.PLoS Biol2023
37084731Proteomic discovery of chemical probes that perturb protein complexes in human cells.Mol Cell2023
36580919Small intestine and colon tissue-resident memory CD8<sup>+</sup> T cells exhibit molecular heterogeneity and differential dependence on Eomes.Immunity2023
36510111An RNA-targeting CRISPR-Cas13d system alleviates disease-related phenotypes in Huntington's disease models.Nat Neurosci2023
37398033Zfp697 is an RNA-binding protein that regulates skeletal muscle inflammation and regeneration.bioRxiv2023
37333282Large-scale map of RNA binding protein interactomes across the mRNA life-cycle.bioRxiv2023
36763002In Vivo Screening Unveils Pervasive RNA-Binding Protein Dependencies in Leukemic Stem Cells and Identifies ELAVL1 as a Therapeutic Target.Blood Cancer Discov2023
36759613Splicing factor SRSF1 deficiency in the liver triggers NASH-like pathology and cell death.Nat Commun2023
37388912Skipper analysis of eCLIP datasets enables sensitive detection of constrained translation factor binding sites.Cell Genom2023
36627300Author Correction: Characterization of an RNA binding protein interactome reveals a context-specific post-transcriptional landscape of MYC-amplified medulloblastoma.Nat Commun2023
36693761Programmable macromolecule-based RNA-targeting therapies to treat human neurological disorders.RNA2023
36550273Multiplexed transcriptome discovery of RNA-binding protein binding sites by antibody-barcode eCLIP.Nat Methods2023
36993706Xiphoid nucleus of the midline thalamus controls cold-induced food seeking.bioRxiv2023
36864190Remodeling oncogenic transcriptomes by small molecules targeting NONO.Nat Chem Biol2023
36724232RNA binding protein DDX5 restricts RORγt<sup>+</sup> T<sub>reg</sub> suppressor function to promote intestine inflammation.Sci Adv2023
37421941HydRA: Deep-learning models for predicting RNA-binding capacity from protein interaction association context and protein sequence.Mol Cell2023
37224531Pyruvate Kinase M (PKM) binds ribosomes in a poly-ADP ribosylation dependent manner to induce translational stalling.Nucleic Acids Res2023
37917746Junior scientists spotlight social bonds in seminars for diversity, equity, and inclusion in STEM.PLoS One2023
37808757Expanded palette of RNA base editors for comprehensive RBP-RNA interactome studies.bioRxiv2023
37751740RANK ligand converts the NCoR/HDAC3 co-repressor to a PGC1β- and RNA-dependent co-activator of osteoclast gene expression.Mol Cell2023
37662229Stratification of enterochromaffin cells by single-cell expression analysis.bioRxiv2023
37587337Xiphoid nucleus of the midline thalamus controls cold-induced food seeking.Nature2023
37790334A phage nucleus-associated RNA-binding protein is required for jumbo phage infection.bioRxiv2023
37784060FLARE: a fast and flexible workflow for identifying RNA editing foci.BMC Bioinformatics2023
37739431Seryl-tRNA synthetase promotes translational readthrough by mRNA binding and involvement of the selenocysteine incorporation machinery.Nucleic Acids Res2023
37873158Localized synthesis of molecular chaperones sustains neuronal proteostasis.bioRxiv2023
37673892A super-enhancer-regulated RNA-binding protein cascade drives pancreatic cancer.Nat Commun2023
36993706Xiphoid nucleus of the midline thalamus controls cold-induced food seeking.bioRxiv2023
37421941HydRA: Deep-learning models for predicting RNA-binding capacity from protein interaction association context and protein sequence.Mol Cell2023
37388912Skipper analysis of eCLIP datasets enables sensitive detection of constrained translation factor binding sites.Cell Genom2023
37084731Proteomic discovery of chemical probes that perturb protein complexes in human cells.Mol Cell2023
37333282Large-scale map of RNA binding protein interactomes across the mRNA life-cycle.bioRxiv2023
37398033Zfp697 is an RNA-binding protein that regulates skeletal muscle inflammation and regeneration.bioRxiv2023
37224531Pyruvate Kinase M (PKM) binds ribosomes in a poly-ADP ribosylation dependent manner to induce translational stalling.Nucleic Acids Res2023
36724232RNA binding protein DDX5 restricts RORγt<sup>+</sup> T<sub>reg</sub> suppressor function to promote intestine inflammation.Sci Adv2023
36550273Multiplexed transcriptome discovery of RNA-binding protein binding sites by antibody-barcode eCLIP.Nat Methods2023
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Collaborators

Eric L Van Nostrand
University of California
Co-authored papers 36
Stefan Aigner
University of California San Diego
Co-authored papers 33
Shashank Sathe
University of California, USA Institute for Genomic Medicine
Co-authored papers 26
Christopher B Burge
Co-authored papers 21
Steven M Blue
University of California San Diego
Co-authored papers 20
Emily C Wheeler
University of California
Co-authored papers 17
Xiang-Dong Fu
Co-authored papers 15
Brenton R Graveley
Co-authored papers 14
John T Chang
University of California San Diego
Co-authored papers 12
Alysson R Muotri
Department of Pediatrics/Rady Children's Hospital, University of California San Diego
Co-authored papers 11
Pedro Belda-Ferre
University of California San Diego
Co-authored papers 10
Peter Freese
Co-authored papers 8
Eric Lécuyer
Co-authored papers 8
Peter De Hoff
University of California San Diego
Co-authored papers 8
Rebecca Fielding-Miller
Herbert Wertheim School of Public Health, University of California
Co-authored papers 8
Rebecca Tsai
University of California San Diego
Co-authored papers 8
Xintao Wei
Co-authored papers 8
Isaac A Chaim
University of California San Diego
Co-authored papers 8
Boyko Kakaradov
Deep Genomics Inc., University Avenue
Co-authored papers 7
Clarisse Marotz
University of California San Diego
Co-authored papers 6
Aaron F Carlin
Co-authored papers 6
Emily Eisner
University of Manchester
Co-authored papers 6
Kathleen M Fisch
Center for Computational Biology and Bioinformatics, University of California
Co-authored papers 5
Nicole G Coufal
University of California
Co-authored papers 5
Kristen Jepsen
Institute for Genomic Medicine, University of California San Diego
Co-authored papers 5
Wendy Huang
Co-authored papers 5
Deborah H Spector
Co-authored papers 4
Kelly A Frazer
University of California, USA Institute for Genomic Medicine
Co-authored papers 4
Karthik Gangavarapu
the Scripps Research Institute
Co-authored papers 4
Jocelyn G Olvera
Co-authored papers 4
Release 1.2