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Author Details

Toni Gabald??n
Catalan Institution for Research and Advanced Studies
2003
282
71
PMIDPaper TitleJournal TitlePublished Year
36761895Multiplexed target enrichment of coding and non-coding transcriptomes enables studying <i>Candida</i> spp. infections from human derived samples.Front Cell Infect Microbiol2023
38074465JLOH: Inferring loss of heterozygosity blocks from sequencing data.Comput Struct Biotechnol J2023
37772846Overlooked <i>Candida glabrata</i> petites are echinocandin tolerant, induce host inflammatory responses, and display poor <i>in vivo</i> fitness.mBio2023
37124042Whole genome analysis of two sympatric human <i>Mansonella</i>: <i>Mansonella perstans</i> and <i>Mansonella</i> sp "DEUX".Front Cell Infect Microbiol2023
37121240Worldwide emergence of fluconazole-resistant Candida parapsilosis: current framework and future research roadmap.Lancet Microbe2023
37348192Nothing makes sense in drug resistance except in the light of evolution.Curr Opin Microbiol2023
37170256Evolution of loss of heterozygosity patterns in hybrid genomes of Candida yeast pathogens.BMC Biol2023
36971476A hybrid approach to assess the structural impact of long noncoding RNA mutations uncovers key NEAT1 interactions in colorectal cancer.IUBMB Life2023
37100456Whole-genome sequencing confirms a persistent candidaemia clonal outbreak due to multidrug-resistant Candida parapsilosis.J Antimicrob Chemother2023
37069619Phylogenomics of the Olea europaea complex using 15 whole genomes supports recurrent genetic admixture together with differentiation into seven subspecies.BMC Biol2023
37398397Overlooked <i>Candida glabrata</i> petites are echinocandin tolerant, induce host inflammatory responses, and display poor <i>in vivo</i> fitness.bioRxiv2023
36806474EvolClustDB: Exploring Eukaryotic Gene Clusters with Evolutionarily Conserved Genomic Neighbourhoods.J Mol Biol2023
34172558Lung microbiota predict invasive pulmonary aspergillosis and its outcome in immunocompromised patients.Thorax2022
37746239Editorial: Genomic insights on fungal hybrids.Front Fungal Biol2022
35585074Citizen-science reveals changes in the oral microbiome in Spain through age and lifestyle factors.NPJ Biofilms Microbiomes2022
35841659On the Biology, Diversity and Evolution of Nucleariid Amoebae (Amorphea, Obazoa, Opisthokonta<sup>1</sup>.Protist2022
35583263Chromosome-level assembly, annotation and phylome of Pelobates cultripes, the western spadefoot toad.DNA Res2022
35347986Benzylic Dehydroxylation of Echinocandin Antifungal Drugs Restores Efficacy against Resistance Conferred by Mutated Glucan Synthase.J Am Chem Soc2022
35438177Genome analysis of five recently described species of the CUG-Ser clade uncovers Candida theae as a new hybrid lineage with pathogenic potential in the Candida parapsilosis species complex.DNA Res2022
35404119Multiple Hybridization Events Punctuate the Evolutionary Trajectory of <i>Malassezia furfur</i>.mBio2022
35766381Examination of Genome-Wide Ortholog Variation in Clinical and Environmental Isolates of the Fungal Pathogen Aspergillus fumigatus.mBio2022
35345665Candidemia Among Coronavirus Disease 2019 Patients in Turkey Admitted to Intensive Care Units: A Retrospective Multicenter Study.Open Forum Infect Dis2022
35835427Evolutionary analyses of genes in Echinodermata offer insights towards the origin of metazoan phyla.Genomics2022
35692094Secondary structure prediction of long noncoding RNA: review and experimental comparison of existing approaches.Brief Bioinform2022
35713390Using genomics to understand the mechanisms of virulence and drug resistance in fungal pathogens.Biochem Soc Trans2022
35552456The Quest for Orthologs orthology benchmark service in 2022.Nucleic Acids Res2022
36612118Microbiome Profiling from Fecal Immunochemical Test Reveals Microbial Signatures with Potential for Colorectal Cancer Screening.Cancers (Basel)2022
36209154Chromosome-level assemblies from diverse clades reveal limited structural and gene content variation in the genome of Candida glabrata.BMC Biol2022
35882189Patterns of Genomic Variation in the Opportunistic Pathogen Candida glabrata Suggest the Existence of Mating and a Secondary Association with Humans.Curr Biol2022
36010859Discovery and Validation of Clinically Relevant Long Non-Coding RNAs in Colorectal Cancer.Cancers (Basel)2022
35974382PerSVade: personalized structural variant detection in any species of interest.Genome Biol2022
35007279Chromatin profiling reveals heterogeneity in clinical isolates of the human pathogen Aspergillus fumigatus.PLoS Genet2022
35087123Changes in the stool and oropharyngeal microbiome in obsessive-compulsive disorder.Sci Rep2022
34718760PhylomeDB V5: an expanding repository for genome-wide catalogues of annotated gene phylogenies.Nucleic Acids Res2022
33106602Timing the origin of eukaryotic cellular complexity with ancient duplications.Nat Ecol Evol2021
33906412Shared evolutionary footprints suggest mitochondrial oxidative damage underlies multiple complex I losses in fungi.Open Biol2021
33753919Candida pathogens induce protective mitochondria-associated type I interferon signalling and a damage-driven response in vaginal epithelial cells.Nat Microbiol2021
33808770A Mouse Model Suggests That Heart Failure and Its Common Comorbidity Sleep Fragmentation Have No Synergistic Impacts on the Gut Microbiome.Microorganisms2021
33835437Profiling of RNA Structure at Single-Nucleotide Resolution Using nextPARS.Methods Mol Biol2021
33724404Extreme diversification driven by parallel events of massive loss of heterozygosity in the hybrid lineage of Candida albicans.Genetics2021
34916523The long non-coding RNA landscape of Candida yeast pathogens.Nat Commun2021
34909054Comparative genomic analysis of clinical <i>Candida glabrata</i> isolates identifies multiple polymorphic loci that can improve existing multilocus sequence typing strategy.Stud Mycol2021
34901109Sex-Specific Effects of Synbiotic Exposure in Mice on Addictive-Like Behavioral Alterations Induced by Chronic Alcohol Intake Are Associated With Changes in Specific Gut Bacterial Taxa and Brain Tryptophan Metabolism.Front Nutr2021
34710198Human albumin enhances the pathogenic potential of Candida glabrata on vaginal epithelial cells.PLoS Pathog2021
34699784Narrow mutational signatures drive acquisition of multidrug resistance in the fungal pathogen Candida glabrata.Curr Biol2021
34749730The transposable element-rich genome of the cereal pest Sitophilus oryzae.BMC Biol2021
34720775The evolving species concepts used for yeasts: from phenotypes and genomes to speciation networks.Fungal Divers2021
34104346Citizen-science based study of the oral microbiome in Cystic fibrosis and matched controls reveals major differences in diversity and abundance of bacterial and fungal species.J Oral Microbiol2021
34129020Genome analysis of Candida subhashii reveals its hybrid nature and dual mitochondrial genome conformations.DNA Res2021
34125917Human tRNAs with inosine 34 are essential to efficiently translate eukarya-specific low-complexity proteins.Nucleic Acids Res2021
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Collaborators

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University of Lausanne
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Universitat de Barcelona (UB)
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Andalusian Public Foundation Progress and Health-FPS
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Stockholm University
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Suzanna E Lewis
Lawrence Berkeley National Laboratory
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Vadim N Gladyshev
Brigham and Women's Hospital
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David A Ray
Co-authored papers 3
Paolo Ribeca
The James Hutton Institute
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Fran Supek
Catalan Institution for Research and Advanced Studies (ICREA)
Co-authored papers 3
Peer Bork
University of Wurzburg
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Asaf Salamov
US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory
Co-authored papers 2
Robert Hubley
Co-authored papers 2
Ignacio Medina
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David Swarbreck
Co-authored papers 2
William J Murphy
Co-authored papers 2
Diego Miranda-Saavedra
Co-authored papers 2
Arian F A Smit
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Release 1.2