Skip to Main Content

Author Details

Bing Ren
Center for Epigenomics, University of California San Diego
1995
265
107
Trey Ideker (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36593410A spatial genome aligner for resolving chromatin architectures from multiplexed DNA FISH.Nat Biotechnol2023
35840754Characterizing cis-regulatory elements using single-cell epigenomics.Nat Rev Genet2023
37845234Genome-wide analysis of the interplay between chromatin-associated RNA and 3D genome organization in human cells.Nat Commun2023
37745443SnapATAC2: a fast, scalable and versatile tool for analysis of single-cell omics data.bioRxiv2023
38092917Single-cell analysis of chromatin accessibility in the adult mouse brain.Nature2023
38092918Conserved and divergent gene regulatory programs of the mammalian neocortex.Nature2023
38092913Single-cell DNA methylome and 3D multi-omic atlas of the adult mouse brain.Nature2023
37563440Droplet-based single-cell joint profiling of histone modifications and transcriptomes.Nat Struct Mol Biol2023
37155843Integrated analysis of single-cell chromatin state and transcriptome identified common vulnerability despite glioblastoma heterogeneity.Proc Natl Acad Sci U S A2023
37081156Topologically associating domain boundaries are required for normal genome function.Commun Biol2023
36646934Author Correction: A spatial genome aligner for resolving chromatin architectures from multiplexed DNA FISH.Nat Biotechnol2023
36638328KDM6A Loss Triggers an Epigenetic Switch That Disrupts Urothelial Differentiation and Drives Cell Proliferation in Bladder Cancer.Cancer Res2023
37390046A guide to the BRAIN Initiative Cell Census Network data ecosystem.PLoS Biol2023
37131654Single-cell DNA Methylome and 3D Multi-omic Atlas of the Adult Mouse Brain.bioRxiv2023
37071996Dynamic changes in P300 enhancers and enhancer-promoter contacts control mouse cardiomyocyte maturation.Dev Cell2023
37388466Hepatic transcriptome analysis provides new insights into ghrelin regulation of the liver in Nile tilapia (<i>Oreochromis niloticus</i>).Front Vet Sci2023
37322178SALL1 enforces microglia-specific DNA binding and function of SMADs to establish microglia identity.Nat Immunol2023
36807069Single-Cell Joint Profiling of Open Chromatin and Transcriptome by Paired-Seq.Methods Mol Biol2023
37066152Comparative single cell epigenomic analysis of gene regulatory programs in the rodent and primate neocortex.bioRxiv2023
37425964Cell Type- and Tissue-specific Enhancers in Craniofacial Development.bioRxiv2023
37492103Robust enhancer-gene regulation identified by single-cell transcriptomes and epigenomes.Cell Genom2023
37419111Spatial and temporal organization of the genome: Current state and future aims of the 4D nucleome project.Mol Cell2023
37161089Interpreting non-coding disease-associated human variants using single-cell epigenomics.Nat Rev Genet2023
36593410A spatial genome aligner for resolving chromatin architectures from multiplexed DNA FISH.Nat Biotechnol2023
37492103Robust enhancer-gene regulation identified by single-cell transcriptomes and epigenomes.Cell Genom2023
37845234Genome-wide analysis of the interplay between chromatin-associated RNA and 3D genome organization in human cells.Nat Commun2023
37745443SnapATAC2: a fast, scalable and versatile tool for analysis of single-cell omics data.bioRxiv2023
38092917Single-cell analysis of chromatin accessibility in the adult mouse brain.Nature2023
38092918Conserved and divergent gene regulatory programs of the mammalian neocortex.Nature2023
38092913Single-cell DNA methylome and 3D multi-omic atlas of the adult mouse brain.Nature2023
37563440Droplet-based single-cell joint profiling of histone modifications and transcriptomes.Nat Struct Mol Biol2023
35840754Characterizing cis-regulatory elements using single-cell epigenomics.Nat Rev Genet2023
37425964Cell Type- and Tissue-specific Enhancers in Craniofacial Development.bioRxiv2023
37161089Interpreting non-coding disease-associated human variants using single-cell epigenomics.Nat Rev Genet2023
37322178SALL1 enforces microglia-specific DNA binding and function of SMADs to establish microglia identity.Nat Immunol2023
37390046A guide to the BRAIN Initiative Cell Census Network data ecosystem.PLoS Biol2023
37155843Integrated analysis of single-cell chromatin state and transcriptome identified common vulnerability despite glioblastoma heterogeneity.Proc Natl Acad Sci U S A2023
37388466Hepatic transcriptome analysis provides new insights into ghrelin regulation of the liver in Nile tilapia (<i>Oreochromis niloticus</i>).Front Vet Sci2023
37419111Spatial and temporal organization of the genome: Current state and future aims of the 4D nucleome project.Mol Cell2023
37081156Topologically associating domain boundaries are required for normal genome function.Commun Biol2023
37071996Dynamic changes in P300 enhancers and enhancer-promoter contacts control mouse cardiomyocyte maturation.Dev Cell2023
37131654Single-cell DNA Methylome and 3D Multi-omic Atlas of the Adult Mouse Brain.bioRxiv2023
37066152Comparative single cell epigenomic analysis of gene regulatory programs in the rodent and primate neocortex.bioRxiv2023
36646934Author Correction: A spatial genome aligner for resolving chromatin architectures from multiplexed DNA FISH.Nat Biotechnol2023
36807069Single-Cell Joint Profiling of Open Chromatin and Transcriptome by Paired-Seq.Methods Mol Biol2023
36638328KDM6A Loss Triggers an Epigenetic Switch That Disrupts Urothelial Differentiation and Drives Cell Proliferation in Bladder Cancer.Cancer Res2023
34826415Improved epicardial cardiac fibroblast generation from iPSCs.J Mol Cell Cardiol2022
36111008Bioinformatics analysis of BIRC5 in human cancers.Ann Transl Med2022
36351387Systematic discovery and functional dissection of enhancers needed for cancer cell fitness and proliferation.Cell Rep2022
36016944Insulin-like growth factor 1 injection changes gene expression related to amino acid transporting, complement and coagulation cascades in the stomach of tilapia revealed by RNA-seq.Front Immunol2022
  • 1 - 50 of 530

Recommended Authors

Maxwell R Mumbach
Broad Institute of MIT and Harvard
Career Start Year 2013
Number of shared co-authors 8
Yong Chen
Rowan University
Career Start Year 2013
Number of shared co-authors 2
Jeremy M Simon
University of North Carolina
Career Start Year 2010
Number of shared co-authors 45
Greg Donahue
Penn Epigenetics Institute, Perelman School of Medicine, University of Pennsylvania
Career Start Year 2010
Number of shared co-authors 1
Piotr J Balwierz
MRC London Institute of Medical Sciences
Career Start Year 2009
Number of shared co-authors 10
Suhn K Rhie
Keck School of Medicine of USC
Career Start Year 2009
Number of shared co-authors 10
Lukas Chavez
University of California San Diego
Career Start Year 2008
Number of shared co-authors 13
Chongzhi Zang
Center for Public Health Genomics, University of Virginia
Career Start Year 2008
Number of shared co-authors 6
Robin Andersson
University of Copenhagen
Career Start Year 2007
Number of shared co-authors 8
Altuna Akalin
Berlin Institute for Medical Systems Biology
Career Start Year 2006
Number of shared co-authors 12
Songjoon Baek
Center for Cancer Research, National Cancer Institute
Career Start Year 2006
Number of shared co-authors 6
Yue Lu
The University of Texas MD Anderson Cancer Center
Career Start Year 2006
Number of shared co-authors 3
Shyam Prabhakar
Genome Institute of Singapore (GIS)
Career Start Year 2004
Number of shared co-authors 14
Lingyun Song
Center for Genomic & Computational Biology, Duke University
Career Start Year 2004
Number of shared co-authors 60
Mathieu Lupien
Princess Margaret Cancer Research Centre
Career Start Year 2003
Number of shared co-authors 9
Alexias Safi
Center for Genomic and Computational Biology, Duke University Medical Center
Career Start Year 2003
Number of shared co-authors 46
Michael J Buck
Jacobs School of Medicine and Biomedical Sciences, University at Buffalo
Career Start Year 2002
Number of shared co-authors 3
Ho-Ryun Chung
Institute of Medical Bioinformatics and Biostatistics, Philipps University of Marburg
Career Start Year 2002
Number of shared co-authors 8
Amos Tanay
Weizmann Institute of Science
Career Start Year 2001
Number of shared co-authors 14
Yoichiro Shibata
Center for Genomic and Computational Biology, Duke University.
Career Start Year 2000
Number of shared co-authors 17
Michael D Wilson
SickKids Research Institute
Career Start Year 2000
Number of shared co-authors 8
Stefan Bekiranov
University of Virginia
Career Start Year 2000
Number of shared co-authors 7
Sven Heinz
U.C. San Diego School of Medicine
Career Start Year 2000
Number of shared co-authors 18
Benjamin P Berman
Institute for Medical Research Israel-Canada, The Hebrew University of Jerusalem
Career Start Year 2000
Number of shared co-authors 27
Kai Tan
University of Pennsylvania
Career Start Year 1999
Number of shared co-authors 10
Boris Lenhard
MRC London Institute of Medical Sciences
Career Start Year 1996
Number of shared co-authors 58
Alistair R R Forrest
RIKEN Center for Integrative Medical Sciences
Career Start Year 1994
Number of shared co-authors 14
Howard Y Chang
Center for Personal Dynamic Regulomes, Stanford University
Career Start Year 1992
Number of shared co-authors 37
Bas van Steensel
Oncode Institute, Netherlands Cancer Institute
Career Start Year 1991
Number of shared co-authors 14
Hideya Kawaji
RIKEN Center for Integrative Medical Sciences
Career Start Year 1984
Number of shared co-authors 20

Collaborators

Joseph R Ecker
The Salk Institute for Biological Studies
Co-authored papers 36
Sebastian Preissl
Center for Epigenomics, University of California San Diego
Co-authored papers 28
Zhen Ye
Ludwig Institute for Cancer Research, University of California San Diego
Co-authored papers 26
Gary C Hon
Cecil H. and Ida Green Center for Reproductive Biology Sciences
Co-authored papers 21
Yunjiang Qiu
Ludwig Institute for Cancer Research, University of California
Co-authored papers 21
Ah Young Lee
Co-authored papers 21
Rongxin Fang
Ludwig Institute for Cancer Research, University of California San Diego
Co-authored papers 21
Miao Yu
Co-authored papers 20
Joseph R Nery
The Salk Institute for Biological Studies
Co-authored papers 19
Samantha Kuan
University of California San Diego
Co-authored papers 19
Yin Shen
Wenzhou Medical University
Co-authored papers 18
Bin Li
Co-authored papers 18
David U Gorkin
Center for Epigenomics, University of California San Diego
Co-authored papers 17
Wei Wang
Co-authored papers 17
Len A Pennacchio
Lawrence Berkeley National Laboratory
Co-authored papers 16
Axel Visel
Co-authored papers 16
Robert D Hawkins
Co-authored papers 16
Wei Wang
IBM Thomas J Watson Research Center, University of California Los Angeles, University of North Carolina at Chapel Hill
Co-authored papers 16
Yanxiao Zhang
Co-authored papers 16
Manolis Kellis
Massachusetts Institute of Technology
Co-authored papers 13
Lee E Edsall
Center for Genomic and Computational Biology, Duke University.
Co-authored papers 13
Veena Afzal
Co-authored papers 12
Anthony D Schmitt
Co-authored papers 12
Rong Hu
Co-authored papers 12
Kyle J Gaulton
Co-authored papers 12
Siddarth Selvaraj
Co-authored papers 12
Diane E Dickel
Co-authored papers 12
John A Stamatoyannopoulos
Altius Institute for Biomedical Sciences
Co-authored papers 11
Inkyung Jung
Co-authored papers 11
Joshua Chiou
Co-authored papers 10
Release 1.2