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Author Details

She Zhang
University of Pittsburgh School of Medicine
2015
16
10
Trey Ideker (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
35639793Elastic network modeling of cellular networks unveils sensor and effector genes that control information flow.PLoS Comput Biol2022
33413539HiDeF: identifying persistent structures in multiscale 'omics data.Genome Biol2021
33822884ProDy 2.0: increased scale and scope after 10 years of protein dynamics modelling with Python.Bioinformatics2021
34240914Normal mode analysis of membrane protein dynamics using the vibrational subsystem analysis.J Chem Phys2021
34240100ClustENMD: efficient sampling of biomolecular conformational space at atomic resolution.Bioinformatics2021
32511374An insertion unique to SARS-CoV-2 exhibits superantigenic character strengthened by recent mutations.bioRxiv2020
31785465Intrinsic dynamics is evolutionarily optimized to enable allosteric behavior.Curr Opin Struct Biol2020
31828312Differences in the intrinsic spatial dynamics of the chromatin contribute to cell differentiation.Nucleic Acids Res2020
32989130Superantigenic character of an insert unique to SARS-CoV-2 spike supported by skewed TCR repertoire in patients with hyperinflammation.Proc Natl Acad Sci U S A2020
32587977Identifying persistent structures in multiscale 'omics data.bioRxiv2020
31028708Shared Signature Dynamics Tempered by Local Fluctuations Enables Fold Adaptability and Specificity.Mol Biol Evol2019
31228486Trimerization of dopamine transporter triggered by AIM-100 binding: Molecular mechanism and effect of mutations.Neuropharmacology2019
30762363Characterization of Differential Dynamics, Specificity, and Allostery of Lipoxygenase Family Members.J Chem Inf Model2019
29735731Shared dynamics of LeuT superfamily members and allosteric differentiation by structural irregularities and multimerization.Philos Trans R Soc Lond B Biol Sci2018
28334818Chromosomal dynamics predicted by an elastic network model explains genome-wide accessibility and long-range couplings.Nucleic Acids Res2017
26143655Structure-Encoded Global Motions and Their Role in Mediating Protein-Substrate Interactions.Biophys J2015
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Collaborators

Ivet Bahar
Laufer Center for Physical and Quantitative Biology, Stony Brook University
Co-authored papers 16
Fan Zheng
University of California San Diego
Co-authored papers 2
Trey Ideker (CM4AI)
University of California San Diego
Co-authored papers 2
Christopher Churas (CM4AI)
University of California San Diego
Co-authored papers 2
Dexter Pratt (CM4AI)
UC San Diego
Co-authored papers 2
Omer Acar
University of Illinois at Chicago
Co-authored papers 1
Valerian E Kagan
Center for Free Radical and Antioxidant Health, University of Pittsburgh
Co-authored papers 1
Natalie Sauerwald
Center for Computational Biology, Flatiron Institute
Co-authored papers 1
Carl Kingsford
Carnegie Mellon University
Co-authored papers 1
Anne-Ruxandra Carvunis
University of Pittsburgh School of Medicine.
Co-authored papers 1
Andrew P VanDemark
University of Pittsburgh
Co-authored papers 1
Release 1.2