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Author Details

Tujin Shi
Pacific Northwest National Laboratory
2004
83
28
PMIDPaper TitleJournal TitlePublished Year
34719806Mass spectrometry-based targeted proteomics for analysis of protein mutations.Mass Spectrom Rev2023
37760474Validation of a Proteomic Signature of Lung Cancer Risk from Bronchial Specimens of Risk-Stratified Individuals.Cancers (Basel)2023
37645907Robust collection and processing for label-free single voxel proteomics.bioRxiv2023
38076956Long-read RNA-seq atlas of novel microglia isoforms elucidates disease-associated genetic regulation of splicing.medRxiv2023
37090580Computational ranking-assisted identification of Plexin-B2 in homotypic and heterotypic clustering of circulating tumor cells in breast cancer metastasis.bioRxiv2023
37030291Phosphorylation barcodes direct biased chemokine signaling at CXCR3.Cell Chem Biol2023
36653408A streamlined tandem tip-based workflow for sensitive nanoscale phosphoproteomics.Commun Biol2023
36770810Targeted Quantification of Protein Phosphorylation and Its Contributions towards Mathematical Modeling of Signaling Pathways.Molecules2023
36626706Targeted Mass Spectrometry Assays for Specific Quantification of Urinary proPSA Isoforms.J Proteome Res2023
36993369Phosphorylation barcodes direct biased chemokine signaling at CXCR3.bioRxiv2023
36781807Use of Longitudinal Serum Analysis and Machine Learning to Develop a Classifier for Cancer Early Detection.Methods Mol Biol2023
34719806Mass spectrometry-based targeted proteomics for analysis of protein mutations.Mass Spectrom Rev2023
37760474Validation of a Proteomic Signature of Lung Cancer Risk from Bronchial Specimens of Risk-Stratified Individuals.Cancers (Basel)2023
38076956Long-read RNA-seq atlas of novel microglia isoforms elucidates disease-associated genetic regulation of splicing.medRxiv2023
37645907Robust collection and processing for label-free single voxel proteomics.bioRxiv2023
37090580Computational ranking-assisted identification of Plexin-B2 in homotypic and heterotypic clustering of circulating tumor cells in breast cancer metastasis.bioRxiv2023
36993369Phosphorylation barcodes direct biased chemokine signaling at CXCR3.bioRxiv2023
37030291Phosphorylation barcodes direct biased chemokine signaling at CXCR3.Cell Chem Biol2023
36626706Targeted Mass Spectrometry Assays for Specific Quantification of Urinary proPSA Isoforms.J Proteome Res2023
36653408A streamlined tandem tip-based workflow for sensitive nanoscale phosphoproteomics.Commun Biol2023
36781807Use of Longitudinal Serum Analysis and Machine Learning to Develop a Classifier for Cancer Early Detection.Methods Mol Biol2023
36770810Targeted Quantification of Protein Phosphorylation and Its Contributions towards Mathematical Modeling of Signaling Pathways.Molecules2023
35058437Circulating ACE2-expressing extracellular vesicles block broad strains of SARS-CoV-2.Nat Commun2022
35752151An antibody-free platform for multiplexed, sensitive quantification of protein biomarkers in complex biomatrices.J Chromatogr A2022
36193887Machine learning-assisted elucidation of CD81-CD44 interactions in promoting cancer stemness and extracellular vesicle integrity.Elife2022
36316752Understanding of bacterial lignin extracellular degradation mechanisms by Pseudomonas putida KT2440 via secretomic analysis.Biotechnol Biofuels Bioprod2022
35058437Circulating ACE2-expressing extracellular vesicles block broad strains of SARS-CoV-2.Nat Commun2022
35752151An antibody-free platform for multiplexed, sensitive quantification of protein biomarkers in complex biomatrices.J Chromatogr A2022
36193887Machine learning-assisted elucidation of CD81-CD44 interactions in promoting cancer stemness and extracellular vesicle integrity.Elife2022
36316752Understanding of bacterial lignin extracellular degradation mechanisms by Pseudomonas putida KT2440 via secretomic analysis.Biotechnol Biofuels Bioprod2022
33951066Nutritional markers and proteome in patients undergoing treatment for pulmonary tuberculosis differ by geographic region.PLoS One2021
34171263The AML microenvironment catalyzes a stepwise evolution to gilteritinib resistance.Cancer Cell2021
33687720Mass Spectrometry-Based Proteomics for Analysis of Hydrophilic Phosphopeptides.Methods Mol Biol2021
33951066Nutritional markers and proteome in patients undergoing treatment for pulmonary tuberculosis differ by geographic region.PLoS One2021
33928097A Comprehensive Urine Proteome Database Generated From Patients With Various Renal Conditions and Prostate Cancer.Front Med (Lausanne)2021
33649493Surfactant-assisted one-pot sample preparation for label-free single-cell proteomics.Commun Biol2021
34318300Antibody-Free Mass Spectrometry Identification of Vascular Integrity Markers in Major Trauma.Neurotrauma Rep2021
34351778Facile One-Pot Nanoproteomics for Label-Free Proteome Profiling of 50-1000 Mammalian Cells.J Proteome Res2021
33649493Surfactant-assisted one-pot sample preparation for label-free single-cell proteomics.Commun Biol2021
33928097A Comprehensive Urine Proteome Database Generated From Patients With Various Renal Conditions and Prostate Cancer.Front Med (Lausanne)2021
33687720Mass Spectrometry-Based Proteomics for Analysis of Hydrophilic Phosphopeptides.Methods Mol Biol2021
34351778Facile One-Pot Nanoproteomics for Label-Free Proteome Profiling of 50-1000 Mammalian Cells.J Proteome Res2021
34318300Antibody-Free Mass Spectrometry Identification of Vascular Integrity Markers in Major Trauma.Neurotrauma Rep2021
34171263The AML microenvironment catalyzes a stepwise evolution to gilteritinib resistance.Cancer Cell2021
32127492An Improved Boosting to Amplify Signal with Isobaric Labeling (iBASIL) Strategy for Precise Quantitative Single-cell Proteomics.Mol Cell Proteomics2020
32429558Proteomic Tissue-Based Classifier for Early Prediction of Prostate Cancer Progression.Cancers (Basel)2020
32127492An Improved Boosting to Amplify Signal with Isobaric Labeling (iBASIL) Strategy for Precise Quantitative Single-cell Proteomics.Mol Cell Proteomics2020
32058723Comprehensive Detection of Single Amino Acid Variants and Evaluation of Their Deleterious Potential in a PANC-1 Cell Line.J Proteome Res2020
32163288National Cancer Institute Think-Tank Meeting Report on Proteomic Cartography and Biomarkers at the Single-Cell Level: Interrogation of Premalignant Lesions.J Proteome Res2020
32884070Publisher Correction: Transcriptomic and proteomic signatures of stemness and differentiation in the colon crypt.Commun Biol2020
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Collaborators

Richard D Smith
Pacific Northwest National Laboratory
Co-authored papers 53
Tao Liu
Pacific Northwest National Laboratory
Co-authored papers 43
Wei-Jun Qian
Co-authored papers 41
Karin D Rodland
Oregon Health and Science University
Co-authored papers 31
Thomas L Fillmore
Pacific Northwest National Laboratory
Co-authored papers 26
Yuqian Gao
Co-authored papers 22
Chia-Feng Tsai
Pacific Northwest National Laboratory
Co-authored papers 18
David G Camp
Co-authored papers 17
Jon M Jacobs
Pacific Northwest National Laboratory
Co-authored papers 14
Athena A Schepmoes
Pacific Northwest National Laboratory
Co-authored papers 14
Sudhir Srivastava
National Cancer Institute
Co-authored papers 13
Ronald J Moore
Co-authored papers 13
Rui Zhao
Co-authored papers 12
Marina A Gritsenko
Pacific Northwest National Laboratory
Co-authored papers 11
H S Wiley
Co-authored papers 10
William B Chrisler
Co-authored papers 10
Paul D Piehowski
Pacific Northwest National Laboratory
Co-authored papers 10
Vladislav A Petyuk
Pacific Northwest National Laboratory
Co-authored papers 8
Chaochao Wu
Co-authored papers 7
Yi-Ting Wang
McGill Research Centre for Studies in Aging
Co-authored papers 6
Huiping Liu
Co-authored papers 5
Anil K Shukla
Pacific Northwest National Laboratory
Co-authored papers 5
Erin S Baker
North Carolina State University
Co-authored papers 4
Carrie M Nielson
Center for Observational Research
Co-authored papers 4
Yuzhi Jia
Feinberg School of Medicine, Northwestern University
Co-authored papers 4
Eric S Orwoll
Metabolism and Clinical Nutrition, Oregon Health and Sciences University.
Co-authored papers 4
Jodi Lapidus
School of Public Health, Oregon Health & Science University-Portland State University
Co-authored papers 4
Jian-Ying Zhou
Co-authored papers 3
Adam C Swensen
Co-authored papers 3
Daniel J Orton
Co-authored papers 3
Release 1.2