Author details

Full Name

Michael Bada

Affiliation

Center for Health AI, University of Colorado Anschutz Medical Campus

ORCID

Career Start Year

2000

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
36125173	Biolink Model: A universal schema for knowledge graphs in clinical, biomedical, and translational science.	Clin Transl Sci	2022
34920707	Concept recognition as a machine translation problem.	BMC Bioinformatics	2021
29218876	OWL-NETS: Transforming OWL Representations for Improved Network Inference.	Pac Symp Biocomput	2018
28818042	Coreference annotation and resolution in the Colorado Richly Annotated Full Text (CRAFT) corpus of biomedical journal articles.	BMC Bioinformatics	2017
31725864	Gold-standard ontology-based anatomical annotation in the CRAFT Corpus.	Database (Oxford)	2017
29295175	Semantic Relations in Compound Nouns: Perspectives from Inter-Annotator Agreement.	Stud Health Technol Inform	2017
25903923	KaBOB: ontology-based semantic integration of biomedical databases.	BMC Bioinformatics	2015
24571547	Large-scale biomedical concept recognition: an evaluation of current automatic annotators and their parameters.	BMC Bioinformatics	2014
24788260	Mapping of biomedical text to concepts of lexicons, terminologies, and ontologies.	Methods Mol Biol	2014
23895341	Dovetailing biology and chemistry: integrating the Gene Ontology with the ChEBI chemical ontology.	BMC Genomics	2013
24268021	Representing annotation compositionality and provenance for the Semantic Web.	J Biomed Semantics	2013
22901054	A corpus of full-text journal articles is a robust evaluation tool for revealing differences in performance of biomedical natural language processing tools.	BMC Bioinformatics	2012
22776079	Concept annotation in the CRAFT corpus.	BMC Bioinformatics	2012
20152934	Cross-product extensions of the Gene Ontology.	J Biomed Inform	2011
20971216	Desiderata for ontologies to be used in semantic annotation of biomedical documents.	J Biomed Inform	2011
18463117	Identification of OBO nonalignments and its implications for OBO enrichment.	Bioinformatics	2008
17011833	Enrichment of OBO ontologies.	J Biomed Inform	2007
17094225	Evaluation of lexical methods for detecting relationships between concepts from multiple ontologies.	Pac Symp Biocomput	2006
14561879	Ribosomal dynamics inferred from variations in experimental measurements.	RNA	2003
12003488	Mining biochemical information: lessons taught by the ribosome.	RNA	2002
10829296	Computational modeling of structural experimental data.	Methods Enzymol	2000
10884352	Solution structural studies and low-resolution model of the Schizosaccharomyces pombe sap1 protein.	J Mol Biol	2000

1 - 22 of 22

Benjamin M Gyori

Khoury College of Computer Sciences, Northeastern University

Career Start Year 2014

Number of shared co-authors 12

Tudor Groza

Perth Children's Hospital

Career Start Year 2012

Number of shared co-authors 12

Jie Zheng

University of Pennsylvania Perelman School of Medicine

Career Start Year 2010

Number of shared co-authors 6

Simon Jupp

European Bioinformatics Institute (EMBL-EBI)

Career Start Year 2009

Number of shared co-authors 14

James Malone

European Bioinformatics Institute (EMBL-EBI)

Career Start Year 2009

Number of shared co-authors 12

Bridget T McInnes

Virginia Commonwealth University

Career Start Year 2007

Number of shared co-authors 0

Christopher J O Baker

University of New Brunswick

Career Start Year 2007

Number of shared co-authors 1

Robert Hoehndorf

King Abdullah University of Science and Technology

Career Start Year 2006

Number of shared co-authors 7

Larisa N Soldatova

University of London

Career Start Year 2005

Number of shared co-authors 4

Leyla Garcia

European Bioinformatics Institute

Career Start Year 2005

Number of shared co-authors 2

David Osumi-Sutherland

European Bioinformatics Institute

Career Start Year 2004

Number of shared co-authors 19

Erick Antezana

Norwegian University of Science and Technology

Career Start Year 2004

Number of shared co-authors 3

Dietrich Rebholz-Schuhmann

University of Cologne

Career Start Year 2003

Number of shared co-authors 6

Benjamin M Good

Lawrence Berkeley National Laboratory

Career Start Year 2003

Number of shared co-authors 12

Alan Ruttenberg

University at Buffalo

Career Start Year 2003

Number of shared co-authors 10

Barry Smith

University at Buffalo

Career Start Year 2003

Number of shared co-authors 14

M??lanie Courtot

Ontario Institute for Cancer Research

Career Start Year 2001

Number of shared co-authors 9

Georgios V Gkoutos

Institute of Cancer and Genomic Sciences, University of Birmingham

Career Start Year 2000

Number of shared co-authors 8

Cecilia N Arighi

University of Delaware

Career Start Year 1998

Number of shared co-authors 7

Robert Stevens

The University of Manchester

Career Start Year 1998

Number of shared co-authors 6

Yasunori Yamamoto

Database Center for Life Science, Joint Support-Center for Data Science Research

Career Start Year 1997

Number of shared co-authors 7

Stefan Schulz

Institute for Medical Informatics, Medical University of Graz

Career Start Year 1997

Number of shared co-authors 3

Suzanna E Lewis

Lawrence Berkeley National Laboratory

Career Start Year 1996

Number of shared co-authors 22

Udo Hahn

Friedrich Schiller University Jena

Career Start Year 1995

Number of shared co-authors 5

Mark D Wilkinson

Universidad Politecnica de Madrid (UPM)

Career Start Year 1993

Number of shared co-authors 4

Olivier Bodenreider

National Institutes of Health

Career Start Year 1993

Number of shared co-authors 3

Tapio Salakoski

University of Turku

Career Start Year 1992

Number of shared co-authors 6

Phillip Lord

Newcastle University

Career Start Year 1991

Number of shared co-authors 3

Lynette Hirschman

The MITRE Corporation

Career Start Year 1981

Number of shared co-authors 6

W John Wilbur

National Center for Biotechnology Information, National Institutes of Health

Career Start Year 1978

Number of shared co-authors 7

row(s) 1 - 30 of 30

Lawrence E Hunter

University of Colorado School of Medicine

Co-authored papers 14

William A Baumgartner

The Academy at Johns Hopkins

Co-authored papers 9

Kevin Bretonnel Cohen

University of Colorado Denver

Co-authored papers 6

Karin Verspoor

National Centre for Infections in Cancer, 5Peter MacCallum Cancer Centre

Co-authored papers 5

Christopher J Mungall

International Society for Biocuration, Lawrence Berkeley National Laboratory, University of Edinburgh, University of Edinburgh School of Biological Sciences

Co-authored papers 3

Russ B Altman

Stanford University

Co-authored papers 3

Christopher Funk

University of Colorado School of Medicine

Co-authored papers 2

Midori A Harris

University of Cambridge

Co-authored papers 2

Michelle Whirl-Carrillo

Stanford University

Co-authored papers 2

David P Hill

Co-authored papers 2

Tanya Z Berardini

Carnegie Institution for Science

Co-authored papers 2

Martha Palmer

University of Colorado Boulder

Co-authored papers 2

Melissa A Haendel

Co-authored papers 2

Tiffany J Callahan

Columbia University

Co-authored papers 2

Melissa A Haendel

American Medical Informatics Association, Oregon Health and Science University, Oregon State University, University of Colorado Anschutz Medical Campus, University of North Carolina at Chapel Hill, University of Wisconsin-Madison

Co-authored papers 2

Jane Lomax

Wellcome Sanger Institute

Co-authored papers 2

Paul A Clemons

Broad Institute

Co-authored papers 1

Paula de Matos

European Bioinformatics Institute

Co-authored papers 1

Christoph Steinbeck

Institute for Inorganic and Analytical Chemistry, Friedrich Schiller University Jena