Skip to Main Content

Author Details

Dmitry Korkin
Worcester Polytechnic Institute
2002
55
19
Andrej Sali (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36893269Divalent siRNAs are bioavailable in the lung and efficiently block SARS-CoV-2 infection.Proc Natl Acad Sci U S A2023
36650144Finding shortest and nearly shortest path nodes in large substantially incomplete networks by hyperbolic mapping.Nat Commun2023
36893269Divalent siRNAs are bioavailable in the lung and efficiently block SARS-CoV-2 infection.Proc Natl Acad Sci U S A2023
37456778Asymmetric trichotomous partitioning overcomes dataset limitations in building machine learning models for predicting siRNA efficacy.Mol Ther Nucleic Acids2023
37066387Single-cell long-read mRNA isoform regulation is pervasive across mammalian brain regions, cell types, and development.bioRxiv2023
36732511Author Correction: Protein interaction network of alternatively spliced isoforms from brain links genetic risk factors for autism.Nat Commun2023
37456778Asymmetric trichotomous partitioning overcomes dataset limitations in building machine learning models for predicting siRNA efficacy.Mol Ther Nucleic Acids2023
37066387Single-cell long-read mRNA isoform regulation is pervasive across mammalian brain regions, cell types, and development.bioRxiv2023
36650144Finding shortest and nearly shortest path nodes in large substantially incomplete networks by hyperbolic mapping.Nat Commun2023
36732511Author Correction: Protein interaction network of alternatively spliced isoforms from brain links genetic risk factors for autism.Nat Commun2023
35776535PHILM2Web: A high-throughput database of macromolecular host-pathogen interactions on the Web.Database (Oxford)2022
35776535PHILM2Web: A high-throughput database of macromolecular host-pathogen interactions on the Web.Database (Oxford)2022
32569394Phytonematode peptide effectors exploit a host post-translational trafficking mechanism to the ER using a novel translocation signal.New Phytol2021
33963340Computational protein modeling and the next viral pandemic.Nat Methods2021
32569394Phytonematode peptide effectors exploit a host post-translational trafficking mechanism to the ER using a novel translocation signal.New Phytol2021
34818539Predicting protein interaction network perturbation by alternative splicing with semi-supervised learning.Cell Rep2021
34818539Predicting protein interaction network perturbation by alternative splicing with semi-supervised learning.Cell Rep2021
33963340Computational protein modeling and the next viral pandemic.Nat Methods2021
32218151Structural Genomics of SARS-CoV-2 Indicates Evolutionary Conserved Functional Regions of Viral Proteins.Viruses2020
32218151Structural Genomics of SARS-CoV-2 Indicates Evolutionary Conserved Functional Regions of Viral Proteins.Viruses2020
30732586The genome of the soybean cyst nematode (Heterodera glycines) reveals complex patterns of duplications involved in the evolution of parasitism genes.BMC Genomics2019
31731769Enriching Human Interactome with Functional Mutations to Detect High-Impact Network Modules Underlying Complex Diseases.Genes (Basel)2019
30732586The genome of the soybean cyst nematode (Heterodera glycines) reveals complex patterns of duplications involved in the evolution of parasitism genes.BMC Genomics2019
31350874DISPOT: a simple knowledge-based protein domain interaction statistical potential.Bioinformatics2019
31731769Enriching Human Interactome with Functional Mutations to Detect High-Impact Network Modules Underlying Complex Diseases.Genes (Basel)2019
31350874DISPOT: a simple knowledge-based protein domain interaction statistical potential.Bioinformatics2019
29410430Novel global effector mining from the transcriptome of early life stages of the soybean cyst nematode Heterodera glycines.Sci Rep2018
30017919Multilayer View of Pathogenic SNVs in Human Interactome through In Silico Edgetic Profiling.J Mol Biol2018
29941426Biological classification with RNA-seq data: Can alternatively spliced transcript expression enhance machine learning classifiers?RNA2018
30464223Genome-wide prediction of bacterial effector candidates across six secretion system types using a feature-based statistical framework.Sci Rep2018
29410430Novel global effector mining from the transcriptome of early life stages of the soybean cyst nematode Heterodera glycines.Sci Rep2018
29941426Biological classification with RNA-seq data: Can alternatively spliced transcript expression enhance machine learning classifiers?RNA2018
30017919Multilayer View of Pathogenic SNVs in Human Interactome through In Silico Edgetic Profiling.J Mol Biol2018
30464223Genome-wide prediction of bacterial effector candidates across six secretion system types using a feature-based statistical framework.Sci Rep2018
28717198Controlled modification of biomolecules by ultrashort laser pulses in polar liquids.Sci Rep2017
28912378Systematic Mutagenesis of Serine Hydroxymethyltransferase Reveals an Essential Role in Nematode Resistance.Plant Physiol2017
28717198Controlled modification of biomolecules by ultrashort laser pulses in polar liquids.Sci Rep2017
28912378Systematic Mutagenesis of Serine Hydroxymethyltransferase Reveals an Essential Role in Nematode Resistance.Plant Physiol2017
26827237DOMMINO 2.0: integrating structurally resolved protein-, RNA-, and DNA-mediated macromolecular interactions.Database (Oxford)2016
26833409Short-Stalked Prosthecomicrobium hirschii Cells Have a Caulobacter-Like Cell Cycle.J Bacteriol2016
26827237DOMMINO 2.0: integrating structurally resolved protein-, RNA-, and DNA-mediated macromolecular interactions.Database (Oxford)2016
28268927Effect-specific analysis of pathogenic SNVs in human interactome: Leveraging edge-based network robustness.Annu Int Conf IEEE Eng Med Biol Soc2016
27980649Incorporation of protein binding effects into likelihood ratio test for exome sequencing data.BMC Proc2016
27587690Patterns of amino acid conservation in human and animal immunodeficiency viruses.Bioinformatics2016
28268927Effect-specific analysis of pathogenic SNVs in human interactome: Leveraging edge-based network robustness.Annu Int Conf IEEE Eng Med Biol Soc2016
27587690Patterns of amino acid conservation in human and animal immunodeficiency viruses.Bioinformatics2016
27980649Incorporation of protein binding effects into likelihood ratio test for exome sequencing data.BMC Proc2016
26833409Short-Stalked Prosthecomicrobium hirschii Cells Have a Caulobacter-Like Cell Cycle.J Bacteriol2016
25944472The variation game: Cracking complex genetic disorders with NGS and omics data.Methods2015
25944472The variation game: Cracking complex genetic disorders with NGS and omics data.Methods2015
  • 1 - 50 of 110

Recommended Authors

Chengxin Zhang
University of Michigan ann arbor
Career Start Year 2017
Number of shared co-authors 1
Jie Hou
Saint Louis University
Career Start Year 2015
Number of shared co-authors 21
Tobias Hamp
Inc. San Diego
Career Start Year 2011
Number of shared co-authors 1
Jian Peng
University of Illinois
Career Start Year 2009
Number of shared co-authors 3
Sheng Wang
University of Texas at Arlington
Career Start Year 2008
Number of shared co-authors 0
Mark N Wass
University of Kent
Career Start Year 2007
Number of shared co-authors 1
Jianlin Cheng
University of Missouri
Career Start Year 2005
Number of shared co-authors 33
Dongsup Kim
Korea Advanced Institute of Science and Technology
Career Start Year 2003
Number of shared co-authors 2
Narcis Fernandez-Fuentes
Institute of Biological, Aberystwyth University
Career Start Year 2002
Number of shared co-authors 31
Mario Albrecht
Institute for Knowledge Discovery, Graz University of Technology
Career Start Year 2002
Number of shared co-authors 1
Predrag Radivojac
Indiana University
Career Start Year 2002
Number of shared co-authors 5
Silvio C E Tosatto
University of Padova
Career Start Year 2002
Number of shared co-authors 4
Lenore J Cowen
Tufts University, 177 College Avenue
Career Start Year 2001
Number of shared co-authors 0
Haiyuan Yu
Weill Institute for Cell and Molecular Biology, Cornell University
Career Start Year 2001
Number of shared co-authors 5
Maricel G Kann
University of Maryland
Career Start Year 2000
Number of shared co-authors 0
Kentaro Tomii
National Institute of Advanced Industrial Science and Technology (AIST)
Career Start Year 1996
Number of shared co-authors 31
Yu Xia
College of Information Engineering, Zhejiang University of Technology
Career Start Year 1996
Number of shared co-authors 6
Asa Ben-Hur
Colorado State University
Career Start Year 1996
Number of shared co-authors 2
Bonnie Berger
Massachusetts Institute of Technology
Career Start Year 1994
Number of shared co-authors 4
Steven E Brenner
University of California berkeley
Career Start Year 1994
Number of shared co-authors 5
Burkhard Rost
Technical University of Munich (TUM)
Career Start Year 1992
Number of shared co-authors 6
Erik L L Sonnhammer
Stockholm University
Career Start Year 1992
Number of shared co-authors 0
Mark Gerstein
Yale University
Career Start Year 1991
Number of shared co-authors 8
Baldo Oliva
Universitat Pompeu Fabra
Career Start Year 1991
Number of shared co-authors 4
Miguel A Andrade-Navarro
Institute of Organismic and Molecular Evolution, Johannes Gutenberg University
Career Start Year 1991
Number of shared co-authors 1
Ram Samudrala
Jacobs School of Medicine and Biomedical Sciences, University at Buffalo
Career Start Year 1990
Number of shared co-authors 2
Ramanathan Sowdhamini
Indian Institute of Science
Career Start Year 1989
Number of shared co-authors 1
Adam Godzik
University of California Riverside
Career Start Year 1987
Number of shared co-authors 5
Alfonso Valencia
Josep Carreras Leukaemia Research Institute (IJC)
Career Start Year 1986
Number of shared co-authors 7
Chris Sander
Broad Institute of MIT and Harvard
Career Start Year 1979
Number of shared co-authors 6

Collaborators

Nan Zhao
Department of Computer Science and Informatics Institute, University of Missouri
Co-authored papers 15
Andrej Sali (CM4AI)
University of California San Francisco
Co-authored papers 5
Frank Alber
University of California los angeles
Co-authored papers 3
Fred P Davis
Howard Hughes Medical Institute
Co-authored papers 3
Dheeraj Malhotra
MS Research Unit
Co-authored papers 2
Vladimir Vacic
Stanley Institute for Cognitive Genomics
Co-authored papers 2
Anastasia Khvorova
RNA Therapeutics Institute, University of Massachusetts Chan Medical School
Co-authored papers 2
Frederick P Roth
University of Toronto
Co-authored papers 2
Steve Horvath
David Geffen School of Medicine, University of California los angeles
Co-authored papers 2
Maya Topf
Leibniz-Institut fur Virologie (LIV)
Co-authored papers 2
Jonathan Sebat
University of California San Diego
Co-authored papers 2
Mohan Somasundaran
University of Massachusetts Chan Medical School
Co-authored papers 1
Panagiotis L Kastritis
Interdisciplinary Research Center HALOmem, Martin Luther University Halle-Wittenberg
Co-authored papers 1
Shiyong Liu
Co-authored papers 1
Julie C Mitchell
Co-authored papers 1
Iain H Moal
GSK Medicines Research Centre
Co-authored papers 1
Krishna Praneeth Kilambi
Co-authored papers 1
Brian Jim??nez-Garc??a
Utrecht University
Co-authored papers 1
Dmitri Beglov
Boston University
Co-authored papers 1
Dimitri Gilis
Co-authored papers 1
Shide Liang
Co-authored papers 1
Carol A Gross
University of California san francisco
Co-authored papers 1
Vladan Lu??i??
Max-Planck-Institute of Biochemistry
Co-authored papers 1
Carol M Anderson
University of California san francisco
Co-authored papers 1
David Baker
University of Washington
Co-authored papers 1
Thom Vreven
Visterra Inc.
Co-authored papers 1
Song Yi
Livestrong Cancer Institutes, Dell Medical School, The University of Texas at Austin
Co-authored papers 1
Zachary Kennedy
Co-authored papers 1
Meng Cui
Co-authored papers 1
Hiromitsu Shimoyama
Co-authored papers 1
Release 1.2