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Author Details

Spyridon Bakas
Richards Medical Research Laboratories (S.B.)
2016
78
25
PMIDPaper TitleJournal TitlePublished Year
36283200CrossMoDA 2021 challenge: Benchmark of cross-modality domain adaptation techniques for vestibular schwannoma and cochlea segmentation.Med Image Anal2023
37744461A Large Open Access Dataset of Brain Metastasis 3D Segmentations with Clinical and Imaging Feature Information.ArXiv2023
37509228Within-Modality Synthesis and Novel Radiomic Evaluation of Brain MRI Scans.Cancers (Basel)2023
37608937The ASNR-MICCAI Brain Tumor Segmentation (BraTS) Challenge 2023: Intracranial Meningioma.ArXiv2023
37928819Leveraging 2D Deep Learning ImageNet-trained models for Native 3D Medical Image Analysis.Brainlesion2023
37770204Systematic Literature Review of Machine Learning Algorithms Using Pretherapy Radiologic Imaging for Glioma Molecular Subtype Prediction.AJNR Am J Neuroradiol2023
37142815CheckList for EvaluAtion of Radiomics research (CLEAR): a step-by-step reporting guideline for authors and reviewers endorsed by ESR and EuSoMII.Insights Imaging2023
37396608The Brain Tumor Segmentation (BraTS) Challenge 2023: <i>Glioma Segmentation in Sub-Saharan Africa Patient Population (BraTS-Africa)</i>.ArXiv2023
36653382Artificial intelligence-based locoregional markers of brain peritumoral microenvironment.Sci Rep2023
36702828Author Correction: Federated learning enables big data for rare cancer boundary detection.Nat Commun2023
36860498Robust Image Population Based Stain Color Normalization: How Many Reference Slides Are Enough?IEEE Open J Eng Med Biol2023
34764084Quantifying T2-FLAIR Mismatch Using Geographically Weighted Regression and Predicting Molecular Status in Lower-Grade Gliomas.AJNR Am J Neuroradiol2022
35840566The Medical Segmentation Decathlon.Nat Commun2022
35798754Author Correction: Enhancing the REMBRANDT MRI collection with expert segmentation labels and quantitative radiomic features.Sci Data2022
35610333Clinical measures, radiomics, and genomics offer synergistic value in AI-based prediction of overall survival in patients with glioblastoma.Sci Rep2022
35701399Enhancing the REMBRANDT MRI collection with expert segmentation labels and quantitative radiomic features.Sci Data2022
35372431Clinically Deployed Computational Assessment of Multiple Sclerosis Lesions.Front Med (Lausanne)2022
35465060Classification of Infection and Ischemia in Diabetic Foot Ulcers Using VGG Architectures.Diabet Foot Ulcers Grand Chall (2021)2022
36998700QU-BraTS: MICCAI BraTS 2020 Challenge on Quantifying Uncertainty in Brain Tumor Segmentation - Analysis of Ranking Scores and Benchmarking Results.J Mach Learn Biomed Imaging2022
36470898Federated learning enables big data for rare cancer boundary detection.Nat Commun2022
36523646The University of California San Francisco Preoperative Diffuse Glioma MRI Dataset.Radiol Artif Intell2022
35871247Expert tumor annotations and radiomics for locally advanced breast cancer in DCE-MRI for ACRIN 6657/I-SPY1.Sci Data2022
35906241The University of Pennsylvania glioblastoma (UPenn-GBM) cohort: advanced MRI, clinical, genomics, &amp; radiomics.Sci Data2022
36137534The federated tumor segmentation (FeTS) tool: an open-source solution to further solid tumor research.Phys Med Biol2022
36331281Optimization of Deep Learning Based Brain Extraction in MRI for Low Resource Environments.Brainlesion2022
34315823Author response to Cunha <i>et al</i>.J Immunother Cancer2021
33521638Multi-institutional noninvasive in vivo characterization of <i>IDH</i>, 1p/19q, and EGFRvIII in glioma using neuro-Cancer Imaging Phenomics Toolkit (neuro-CaPTk).Neurooncol Adv2021
33571780Analyzing magnetic resonance imaging data from glioma patients using deep learning.Comput Med Imaging Graph2021
33849924Radiomics analysis for predicting pembrolizumab response in patients with advanced rare cancers.J Immunother Cancer2021
34885031Applications of Radiomics and Radiogenomics in High-Grade Gliomas in the Era of Precision Medicine.Cancers (Basel)2021
35035351Robust, Primitive, and Unsupervised Quality Estimation for Segmentation Ensembles.Front Neurosci2021
34514469Estimating Glioblastoma Biophysical Growth Parameters Using Deep Learning Regression.Brainlesion2021
34621541Interactive Machine Learning-Based Multi-Label Segmentation of Solid Tumors and Organs.Appl Sci (Basel)2021
34238945MEMS enabled miniaturized light-sheet microscopy with all optical control.Sci Rep2021
34290888Accurate and Robust Alignment of Differently Stained Histologic Images Based on Greedy Diffeomorphic Registration.Appl Sci (Basel)2021
31456318Imaging signatures of glioblastoma molecular characteristics: A radiogenomics review.J Magn Reson Imaging2020
33746333Integrative radiomic analysis for pre-surgical prognostic stratification of glioblastoma patients: from advanced to basic MRI protocols.Proc SPIE Int Soc Opt Eng2020
34382033A Deep Network for Joint Registration and Reconstruction of Images with Pathologies.Mach Learn Med Imaging2020
34282411O-Net: An Overall Convolutional Network for Segmentation Tasks.Mach Learn Med Imaging2020
34354762Longitudinal brain tumor segmentation prediction in MRI using feature and label fusion.Biomed Signal Process Control2020
33118182Reproducibility analysis of multi-institutional paired expert annotations and radiomic features of the Ivy Glioblastoma Atlas Project (Ivy GAP) dataset.Med Phys2020
32743562Towards Population-Based Histologic Stain Normalization of Glioblastoma.Brainlesion2020
33015372The future of digital health with federated learning.NPJ Digit Med2020
32644158iGLASS: imaging integration into the Glioma Longitudinal Analysis Consortium.Neuro Oncol2020
32754723The Cancer Imaging Phenomics Toolkit (CaPTk): Technical Overview.Brainlesion2020
32724046Federated learning in medicine: facilitating multi-institutional collaborations without sharing patient data.Sci Rep2020
32154773The Image Biomarker Standardization Initiative: Standardized Quantitative Radiomics for High-Throughput Image-based Phenotyping.Radiology2020
32153349Segmentation and Classification in Digital Pathology for Glioma Research: Challenges and Deep Learning Approaches.Front Neurosci2020
32152622AI-based prognostic imaging biomarkers for precision neuro-oncology: the ReSPOND consortium.Neuro Oncol2020
32116512Systematic Evaluation of Image Tiling Adverse Effects on Deep Learning Semantic Segmentation.Front Neurosci2020
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Collaborators

Christos Davatzikos
University of Pennsylvania
Co-authored papers 39
Michel Bilello
Perelman School of Medicine, University of Pennsylvania
Co-authored papers 20
Bjoern H Menze
Technische Universitat Munchen, University of Zurich
Co-authored papers 11
Donald M O'Rourke
Abramson Cancer Center, Perelman School of Medicine, University of Pennsylvania
Co-authored papers 10
Russell T Shinohara
University of Pennsylvania
Co-authored papers 10
Jeffrey D Rudie
Center for Intelligent Imaging (ci2), University of California san francisco
Co-authored papers 10
Aristeidis Sotiras
Washington University in St. Louis
Co-authored papers 9
Anahita Fathi Kazerooni
University of Pennsylvania.
Co-authored papers 8
Rivka R Colen
Co-authored papers 7
Benedikt Wiestler
Technical University
Co-authored papers 6
Adam E Flanders
Thomas Jefferson University
Co-authored papers 5
Evan Calabrese
University of California San Francisco
Co-authored papers 5
Daniel S Marcus
Mallinckrodt Institute of Radiology, Washington University School of Medicine
Co-authored papers 5
Jared M Pisapia
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Jill S Barnholtz-Sloan
National Cancer Institute
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Andrew E Sloan
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Laila M Poisson
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Subha Madhavan
Innovation Center for Biomedical Informatics, Georgetown University Medical Center
Co-authored papers 4
Javier E Villanueva-Meyer
University of California san francisco
Co-authored papers 4
Farouk Dako
Center for Global Health, Perelman School of Medicine, University of Pennsylvania
Co-authored papers 4
Guray Erus
Perelman School of Medicine University of Pennsylvania
Co-authored papers 4
Joel Saltz
Stony Brook University
Co-authored papers 4
Michael Weller
University Hospital and University of Zurich
Co-authored papers 3
Jayashree Kalpathy-Cramer
Athinoula A. Martinos Center for Biomedical Imaging, Massachusetts General Hospital
Co-authored papers 3
Jimit Doshi
University of Pennsylvania
Co-authored papers 3
Ben Glocker
Imperial College London
Co-authored papers 3
Joshua D Palmer
Co-authored papers 3
Andreas M Rauschecker
University of California San Francisco
Co-authored papers 3
Maria Martinez-Lage
Massachusetts General Hospital
Co-authored papers 3
Bennett A Landman
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Release 1.2