Author details

Full Name

Matthew C Chambers

Affiliation

ORCID

Career Start Year

2007

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
35716664	Cullin-independent recognition of HHARI substrates by a dynamic RBR catalytic domain.	Structure	2022
29222161	Detection of Proteome Diversity Resulted from Alternative Splicing is Limited by Trypsin Cleavage Specificity.	Mol Cell Proteomics	2018
29092937	An Accessible Proteogenomics Informatics Resource for Cancer Researchers.	Cancer Res	2017
28625833	Colorectal Cancer Cell Line Proteomes Are Representative of Primary Tumors and Predict Drug Sensitivity.	Gastroenterology	2017
26653538	Reproducibility of Differential Proteomic Technologies in CPTAC Fractionated Xenografts.	J Proteome Res	2016
27186799	Greazy: Open-Source Software for Automated Phospholipid Tandem Mass Spectrometry Identification.	Anal Chem	2016
26657539	proBAMsuite, a Bioinformatics Framework for Genome-Based Representation and Analysis of Proteomics Data.	Mol Cell Proteomics	2016
26243018	Correcting systematic bias and instrument measurement drift with mzRefinery.	Bioinformatics	2015
26435129	The 2012/2013 ABRF Proteomic Research Group Study: Assessing Longitudinal Intralaboratory Variability in Routine Peptide Liquid Chromatography Tandem Mass Spectrometry Analyses.	Mol Cell Proteomics	2015
26466103	The Molecular Epidemiological Study of HCV Subtypes among Intravenous Drug Users and Non-Injection Drug Users in China.	PLoS ONE	2015
25043054	Proteogenomic characterization of human colon and rectal cancer.	Nature	2014
24187338	Proteome informatics research group (iPRG)_2012: a study on detecting modified peptides in a complex mixture.	Mol Cell Proteomics	2014
24494671	QC metrics from CPTAC raw LC-MS/MS data interpreted through multivariate statistics.	Analytical Chemistry	2014
23499924	Basophile: accurate fragment charge state prediction improves peptide identification rates.	Genomics Proteomics Bioinformatics	2013
23879310	IDPQuantify: combining precursor intensity with spectral counts for protein and peptide quantification.	J Proteome Res	2013
23482073	The HUPO proteomics standards initiative- mass spectrometry controlled vocabulary.	Database (Oxford)	2013
22159873	TraML--a standard format for exchange of selected reaction monitoring transition lists.	Mol Cell Proteomics	2012
22697456	QuaMeter: multivendor performance metrics for LC-MS/MS proteomics instrumentation.	Anal Chem	2012
22375074	The mzIdentML data standard for mass spectrometry-based proteomics results.	Mol Cell Proteomics	2012
23051804	A cross-platform toolkit for mass spectrometry and proteomics.	Nat Biotechnol	2012
22217208	Pepitome: evaluating improved spectral library search for identification complementarity and quality assessment.	J Proteome Res	2012
21965817	Supporting tool suite for production proteomics.		2011
21214251	Sequence tagging reveals unexpected modifications in toxicoproteomics.	Chem Res Toxicol	2011
20716697	mzML--a community standard for mass spectrometry data.	Mol Cell Proteomics	2011
21520941	ScanRanker: Quality assessment of tandem mass spectra via sequence tagging.	J Proteome Res	2011
20147306	Skyline: an open source document editor for creating and analyzing targeted proteomics experiments.	Bioinformatics	2010
20131910	TagRecon: high-throughput mutation identification through sequence tagging.	J Proteome Res	2010
19522537	IDPicker 2.0: Improved protein assembly with high discrimination peptide identification filtering.	J Proteome Res	2009
18630943	DirecTag: accurate sequence tags from peptide MS/MS through statistical scoring.	Journal of Proteome Research	2008
18606607	ProteoWizard: open source software for rapid proteomics tools development.	Bioinformatics	2008
18939861	Evaluation of strong cation exchange versus isoelectric focusing of peptides for multidimensional liquid chromatography-tandem mass spectrometry.	Journal of Proteome Research	2008
17676885	Proteomic parsimony through bipartite graph analysis improves accuracy and transparency.	J Proteome Res	2007
17269722	MyriMatch: highly accurate tandem mass spectral peptide identification by multivariate hypergeometric analysis.	Journal of Proteome Research	2007