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Author Details

Martin Krallinger
Spanish National Cancer Research Centre
2005
47
26
PMIDPaper TitleJournal TitlePublished Year
34875418ExTRI: Extraction of transcription regulation interactions from literature.Biochim Biophys Acta Gene Regul Mech2022
36197453Overview of the COVID-19 text mining tool interactive demonstration track in BioCreative VII.Database (Oxford)2022
36050787Challenges and opportunities for mining adverse drug reactions: perspectives from pharma, regulatory agencies, healthcare providers and consumers.Database (Oxford)2022
34875418ExTRI: Extraction of transcription regulation interactions from literature.Biochim Biophys Acta Gene Regul Mech2022
36197453Overview of the COVID-19 text mining tool interactive demonstration track in BioCreative VII.Database (Oxford)2022
36050787Challenges and opportunities for mining adverse drug reactions: perspectives from pharma, regulatory agencies, healthcare providers and consumers.Database (Oxford)2022
34327299ECO-CollecTF: A Corpus of Annotated Evidence-Based Assertions in Biomedical Manuscripts.Front Res Metr Anal2021
34327299ECO-CollecTF: A Corpus of Annotated Evidence-Based Assertions in Biomedical Manuscripts.Front Res Metr Anal2021
31307130PharmacoNER Tagger: a deep learning-based tool for automatically finding chemicals and drugs in Spanish medical texts.Genomics Inform2019
31236786Next generation community assessment of biomedical entity recognition web servers: metrics, performance, interoperability aspects of BeCalm.J Cheminform2019
31307130PharmacoNER Tagger: a deep learning-based tool for automatically finding chemicals and drugs in Spanish medical texts.Genomics Inform2019
31236786Next generation community assessment of biomedical entity recognition web servers: metrics, performance, interoperability aspects of BeCalm.J Cheminform2019
28531339LimTox: a web tool for applied text mining of adverse event and toxicity associations of compounds, drugs and genes.Nucleic Acids Res2017
28667284A molecular hypothesis to explain direct and inverse co-morbidities between Alzheimer's Disease, Glioblastoma and Lung cancer.Sci Rep2017
28531339LimTox: a web tool for applied text mining of adverse event and toxicity associations of compounds, drugs and genes.Nucleic Acids Res2017
28475312Information Retrieval and Text Mining Technologies for Chemistry.Chem Rev2017
28475312Information Retrieval and Text Mining Technologies for Chemistry.Chem Rev2017
28667284A molecular hypothesis to explain direct and inverse co-morbidities between Alzheimer's Disease, Glioblastoma and Lung cancer.Sci Rep2017
27542845The Markyt visualisation, prediction and benchmark platform for chemical and gene entity recognition at BioCreative/CHEMDNER challenge.Database (Oxford)2016
27542845The Markyt visualisation, prediction and benchmark platform for chemical and gene entity recognition at BioCreative/CHEMDNER challenge.Database (Oxford)2016
25810766CHEMDNER: The drugs and chemical names extraction challenge.J Cheminform2015
25667547FUN-L: gene prioritization for RNAi screens.Bioinformatics2015
25810773The CHEMDNER corpus of chemicals and drugs and its annotation principles.J Cheminform2015
25810766CHEMDNER: The drugs and chemical names extraction challenge.J Cheminform2015
25667547FUN-L: gene prioritization for RNAi screens.Bioinformatics2015
25810773The CHEMDNER corpus of chemicals and drugs and its annotation principles.J Cheminform2015
24852177BioCreative-IV virtual issue.Database (Oxford)2014
24943848Integration of biological data by kernels on graph nodes allows prediction of new genes involved in mitotic chromosome condensation.Mol Biol Cell2014
24852177BioCreative-IV virtual issue.Database (Oxford)2014
24943848Integration of biological data by kernels on graph nodes allows prediction of new genes involved in mitotic chromosome condensation.Mol Biol Cell2014
23327936An overview of the BioCreative 2012 Workshop Track III: interactive text mining task.Database (Oxford)2013
24048470BioC: a minimalist approach to interoperability for biomedical text processing.Database (Oxford)2013
23327936An overview of the BioCreative 2012 Workshop Track III: interactive text mining task.Database (Oxford)2013
24048470BioC: a minimalist approach to interoperability for biomedical text processing.Database (Oxford)2013
22427808Uncovering the molecular machinery of the human spindle--an integration of wet and dry systems biology.PLoS One2012
22438567How to link ontologies and protein-protein interactions to literature: text-mining approaches and the BioCreative experience.Database (Oxford)2012
22427808Uncovering the molecular machinery of the human spindle--an integration of wet and dry systems biology.PLoS One2012
22789588MyMiner: a web application for computer-assisted biocuration and text annotation.Bioinformatics2012
22513129Text mining for the biocuration workflow.Database (Oxford)2012
23055974Interpretation of the consequences of mutations in protein kinases: combined use of bioinformatics and text mining.Front Physiol2012
23221175BioCreative-2012 virtual issue.Database (Oxford)2012
23221175BioCreative-2012 virtual issue.Database (Oxford)2012
23055974Interpretation of the consequences of mutations in protein kinases: combined use of bioinformatics and text mining.Front Physiol2012
22789588MyMiner: a web application for computer-assisted biocuration and text annotation.Bioinformatics2012
22438567How to link ontologies and protein-protein interactions to literature: text-mining approaches and the BioCreative experience.Database (Oxford)2012
22513129Text mining for the biocuration workflow.Database (Oxford)2012
22151647Overview of the BioCreative III Workshop.BMC Bioinformatics2011
27467152Text Mining for Drugs and Chemical Compounds: Methods, Tools and Applications.Mol Inform2011
22151968BioCreative III interactive task: an overview.BMC Bioinformatics2011
22151929The Protein-Protein Interaction tasks of BioCreative III: classification/ranking of articles and linking bio-ontology concepts to full text.BMC Bioinformatics2011
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Collaborators

Josep Carreras Leukaemia Research Institute (IJC)
Co-authored papers 40
Co-authored papers 15
The MITRE Corporation
Co-authored papers 12
National Center for Biotechnology Information, National Institutes of Health.
Co-authored papers 8
Georgetown University Medical Center
Co-authored papers 7
University of Colorado Denver
Co-authored papers 7
Institute for Research in Immunology and Cancer (IRIC), University of Montreal
Co-authored papers 7
Norwegian University of Science and Technology
Co-authored papers 7
University of Delaware
Co-authored papers 7
National Center for Biotechnology Information, National Institutes of Health
Co-authored papers 6
University of Rome 'Tor Vergata'
Co-authored papers 5
Co-authored papers 5
Co-authored papers 4
Co-authored papers 4
University of Tor Vergata
Co-authored papers 3
Co-authored papers 3
Institute for Research in Immunology and Cancer (IRIC), Universite de Montreal
Co-authored papers 3
University College London, Institute of Structural and Molecular Biology
Co-authored papers 3
University College London, Institute of Structural and Molecular Biology
Co-authored papers 3
University of Otago
Co-authored papers 3
Co-authored papers 2
The Academy at Johns Hopkins
Co-authored papers 2
University of Delaware
Co-authored papers 2
Hospital Universitario y Politecnico la Fe
Co-authored papers 2
College of Ethnic Medicine, Yunnan University of Chinese Medicine
Co-authored papers 2
University of Maryland School of Medicine, Institute for Genome Sciences
Co-authored papers 2
University of Colorado School of Medicine
Co-authored papers 2
Institute of Child Health and Human Development
Co-authored papers 2
Department of Biology and Biotechnologies "Charles Darwin", La Sapienza University
Co-authored papers 2
Inc. Cambridge MA
Co-authored papers 2