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Author Details

Timo Lassmann
Telethon Kids Institute, University of Western Australia
2002
112
47
Trey Ideker (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36637208SAMStat 2: quality control for next generation sequencing data.Bioinformatics2023
36637208SAMStat 2: quality control for next generation sequencing data.Bioinformatics2023
35139903CRISPR single base editing, neuronal disease modelling and functional genomics for genetic variant analysis: pipeline validation using Kleefstra syndrome EHMT1 haploinsufficiency.Stem Cell Res Ther2022
35986006Temporally restricted activation of IFNβ signaling underlies response to immune checkpoint therapy in mice.Nat Commun2022
36577370CD4<sup>+</sup> T cells drive an inflammatory, TNF-α/IFN-rich tumor microenvironment responsive to chemotherapy.Cell Rep2022
35224813An expanded phenotype centric benchmark of variant prioritisation tools.Hum Mutat2022
35139903CRISPR single base editing, neuronal disease modelling and functional genomics for genetic variant analysis: pipeline validation using Kleefstra syndrome EHMT1 haploinsufficiency.Stem Cell Res Ther2022
35176430Functional validation of variants of unknown significance using CRISPR gene editing and transcriptomics: A Kleefstra syndrome case study.Gene2022
36577370CD4<sup>+</sup> T cells drive an inflammatory, TNF-α/IFN-rich tumor microenvironment responsive to chemotherapy.Cell Rep2022
35986006Temporally restricted activation of IFNβ signaling underlies response to immune checkpoint therapy in mice.Nat Commun2022
35224813An expanded phenotype centric benchmark of variant prioritisation tools.Hum Mutat2022
35176430Functional validation of variants of unknown significance using CRISPR gene editing and transcriptomics: A Kleefstra syndrome case study.Gene2022
32614431Zika Virus Changes Methylation of Genes Involved in Immune Response and Neural Development in Brazilian Babies Born With Congenital Microcephaly.J Infect Dis2021
33693626Common and Rare Genetic Variants That Could Contribute to Severe Otitis Media in an Australian Aboriginal Population.Clin Infect Dis2021
32614431Zika Virus Changes Methylation of Genes Involved in Immune Response and Neural Development in Brazilian Babies Born With Congenital Microcephaly.J Infect Dis2021
34526345Searching for a technology-driven acute rheumatic fever test: the START study protocol.BMJ Open2021
33693626Common and Rare Genetic Variants That Could Contribute to Severe Otitis Media in an Australian Aboriginal Population.Clin Infect Dis2021
34526345Searching for a technology-driven acute rheumatic fever test: the START study protocol.BMJ Open2021
32487174Systematic assessment of tissue dissociation and storage biases in single-cell and single-nucleus RNA-seq workflows.Genome Biol2020
32350262Reference exome data for Australian Aboriginal populations to support health-based research.Sci Data2020
32487174Systematic assessment of tissue dissociation and storage biases in single-cell and single-nucleus RNA-seq workflows.Genome Biol2020
33154494The bone marrow microenvironment of pre-B acute lymphoblastic leukemia at single-cell resolution.Sci Rep2020
32765492Rhinovirus Infection Drives Complex Host Airway Molecular Responses in Children With Cystic Fibrosis.Front Immunol2020
33303739A flexible computational pipeline for research analyses of unsolved clinical exome cases.NPJ Genom Med2020
33087711Reference exome data for a Northern Brazilian population.Sci Data2020
33163002Characteristics of TCR Repertoire Associated With Successful Immune Checkpoint Therapy Responses.Front Immunol2020
32718981Comparative transcriptomics of primary cells in vertebrates.Genome Res2020
32718981Comparative transcriptomics of primary cells in vertebrates.Genome Res2020
33087711Reference exome data for a Northern Brazilian population.Sci Data2020
33163002Characteristics of TCR Repertoire Associated With Successful Immune Checkpoint Therapy Responses.Front Immunol2020
33303739A flexible computational pipeline for research analyses of unsolved clinical exome cases.NPJ Genom Med2020
33154494The bone marrow microenvironment of pre-B acute lymphoblastic leukemia at single-cell resolution.Sci Rep2020
32718981Comparative transcriptomics of primary cells in vertebrates.Genome Res2020
32718981Comparative transcriptomics of primary cells in vertebrates.Genome Res2020
32765492Rhinovirus Infection Drives Complex Host Airway Molecular Responses in Children With Cystic Fibrosis.Front Immunol2020
32350262Reference exome data for Australian Aboriginal populations to support health-based research.Sci Data2020
30610612Antisense Transcription in Loci Associated to Hereditary Neurodegenerative Diseases.Mol Neurobiol2019
31665271Kalign 3: multiple sequence alignment of large data sets.Bioinformatics2019
31754101Personalised analytics for rare disease diagnostics.Nat Commun2019
30610612Antisense Transcription in Loci Associated to Hereditary Neurodegenerative Diseases.Mol Neurobiol2019
31467181Expression Levels of Therapeutic Targets as Indicators of Sensitivity to Targeted Therapeutics.Mol Cancer Ther2019
30664627C1 CAGE detects transcription start sites and enhancer activity at single-cell resolution.Nat Commun2019
31533632Identification of novel cerebellar developmental transcriptional regulators with motif activity analysis.BMC Genomics2019
31754101Personalised analytics for rare disease diagnostics.Nat Commun2019
31665271Kalign 3: multiple sequence alignment of large data sets.Bioinformatics2019
31533632Identification of novel cerebellar developmental transcriptional regulators with motif activity analysis.BMC Genomics2019
31467181Expression Levels of Therapeutic Targets as Indicators of Sensitivity to Targeted Therapeutics.Mol Cancer Ther2019
30664627C1 CAGE detects transcription start sites and enhancer activity at single-cell resolution.Nat Commun2019
29325522Correction to: Relatively frequent switching of transcription start sites during cerebellar development.BMC Genomics2018
30407537Integration of genetics and miRNA-target gene network identified disease biology implicated in tissue specificity.Nucleic Acids Res2018
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Collaborators

Yoshihide Hayashizaki
Center for Integrative Medical Sciences
Co-authored papers 65
Piero Carninci
RIKEN Center for Integrative Medical Sciences
Co-authored papers 64
Alistair R R Forrest
RIKEN Center for Integrative Medical Sciences
Co-authored papers 63
Hideya Kawaji
RIKEN Center for Integrative Medical Sciences
Co-authored papers 56
Masayoshi Itoh
RIKEN Center for Integrative Medical Sciences
Co-authored papers 47
Carsten O Daub
International Institute of Molecular and Cell Biology in Warsaw
Co-authored papers 35
Erik Arner
RIKEN Center for Integrative Medical Sciences (IMS)
Co-authored papers 28
Harukazu Suzuki
RIKEN Center for Integrative Medical Sciences
Co-authored papers 21
Marina Lizio
Cerevance Ltd
Co-authored papers 20
Dave S B Hoon
Saint John's Cancer Institute at Saint John's Health Center
Co-authored papers 18
Jessica Severin
Center for Integrative Medical Sciences
Co-authored papers 17
David A Hume
Mater Research Institute-UQ, Translational Research Institute
Co-authored papers 14
Jun Kawai
RIKEN Center for Integrative Medical Sciences
Co-authored papers 14
Takeya Kasukawa
RIKEN Center for Integrative Medical Sciences
Co-authored papers 13
Nicolas Bertin
University Bordeaux, CNRS
Co-authored papers 13
Albin Sandelin
University of Copenhagen
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Akira Hasegawa
RIKEN Center for Integrative Medical Sciences
Co-authored papers 12
Robin Andersson
University of Copenhagen
Co-authored papers 11
Michael Rehli
University Hospital Regensburg
Co-authored papers 11
Imad Abugessaisa
RIKEN Center for Integrative Medical Sciences
Co-authored papers 11
Peter Heutink
German Center for Neurodegenerative Diseases (DZNE).
Co-authored papers 10
Sayaka Nagao-Sato
Ochanomizu University
Co-authored papers 9
Jenefer M Blackwell
Co-authored papers 9
Jayson Harshbarger
RIKEN Center for Integrative Medical Sciences
Co-authored papers 9
Geoffrey J Faulkner
Mater Research Institute - University of Queensland
Co-authored papers 9
Dan Goldowitz
University of British Columbia
Co-authored papers 8
Mutsumi Kanamori-Katayama
Karolinska Institutet
Co-authored papers 8
Yuri Ishizu
RIKEN Center for Life Science Technologies
Co-authored papers 8
Andreas Lennartsson
Karolinska Institute
Co-authored papers 8
Peter Zhang
Child and Family Research Institute, University of British Columbia
Co-authored papers 8
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