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Author Details

Anne E Carpenter
Broad Institute of MIT and Harvard
2004
156
59
Emma Lundberg (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
37745478Evaluating batch correction methods for image-based cell profiling.bioRxiv2024
37745478Evaluating batch correction methods for image-based cell profiling.bioRxiv2024
36824835Assessing the performance of the Cell Painting assay across different imaging systems.bioRxiv2023
37609130A genome-wide atlas of human cell morphology.bioRxiv2023
38045474Reproducible image-based profiling with Pycytominer.ArXiv2023
37678361Deductive automated pollen classification in environmental samples via exploratory deep learning and imaging flow cytometry.New Phytol2023
37753907High-content microscopy reveals a morphological signature of bortezomib resistance.Elife2023
37732209Pervasive mislocalization of pathogenic coding variants underlying human disorders.bioRxiv2023
37344608Optimizing the Cell Painting assay for image-based profiling.Nat Protoc2023
37083703High-content synaptic phenotyping in human cellular models reveals a role for BET proteins in synapse assembly.Elife2023
36824835Assessing the performance of the Cell Painting assay across different imaging systems.bioRxiv2023
37075753FALCON systematically interrogates free fatty acid biology and identifies a novel mediator of lipotoxicity.Cell Metab2023
36947171Predicting reprogramming-related gene expression from cell morphology in human induced pluripotent stem cells.Mol Biol Cell2023
37253881A non-coding variant linked to metabolic obesity with normal weight affects actin remodelling in subcutaneous adipocytes.Nat Metab2023
36865221FALCON systematically interrogates free fatty acid biology and identifies a novel mediator of lipotoxicity.bioRxiv2023
37437569Integrating inflammatory biomarker analysis and artificial-intelligence-enabled image-based profiling to identify drug targets for intestinal fibrosis.Cell Chem Biol2023
37434001Smart microscopes of the future.Nat Methods2023
36921124Interpreting Image-based Profiles using Similarity Clustering and Single-Cell Visualization.Curr Protoc2023
36914634Reference compounds for characterizing cellular injury in high-content cellular morphology assays.Nat Commun2023
37753907High-content microscopy reveals a morphological signature of bortezomib resistance.Elife2023
37609130A genome-wide atlas of human cell morphology.bioRxiv2023
38045474Reproducible image-based profiling with Pycytominer.ArXiv2023
37732209Pervasive mislocalization of pathogenic coding variants underlying human disorders.bioRxiv2023
37678361Deductive automated pollen classification in environmental samples via exploratory deep learning and imaging flow cytometry.New Phytol2023
37253881A non-coding variant linked to metabolic obesity with normal weight affects actin remodelling in subcutaneous adipocytes.Nat Metab2023
37083703High-content synaptic phenotyping in human cellular models reveals a role for BET proteins in synapse assembly.Elife2023
36947171Predicting reprogramming-related gene expression from cell morphology in human induced pluripotent stem cells.Mol Biol Cell2023
37344608Optimizing the Cell Painting assay for image-based profiling.Nat Protoc2023
37075753FALCON systematically interrogates free fatty acid biology and identifies a novel mediator of lipotoxicity.Cell Metab2023
37437569Integrating inflammatory biomarker analysis and artificial-intelligence-enabled image-based profiling to identify drug targets for intestinal fibrosis.Cell Chem Biol2023
37434001Smart microscopes of the future.Nat Methods2023
36921124Interpreting Image-based Profiles using Similarity Clustering and Single-Cell Visualization.Curr Protoc2023
36914634Reference compounds for characterizing cellular injury in high-content cellular morphology assays.Nat Commun2023
36865221FALCON systematically interrogates free fatty acid biology and identifies a novel mediator of lipotoxicity.bioRxiv2023
35063094The new era of quantitative cell imaging-challenges and opportunities.Mol Cell2022
36304163<i>In vitro</i> neutrophil migration is associated with inhaled corticosteroid treatment and serum cytokines in pediatric asthma.Front Pharmacol2022
353873172020 BioImage Analysis Survey: Community experiences and needs for the future.Biol Imaging2022
36063089Why I shrank my lab by half.Elife2022
36057257Virtual screening for small-molecule pathway regulators by image-profile matching.Cell Syst2022
35353015Cell Painting predicts impact of lung cancer variants.Mol Biol Cell2022
36253645PyImageJ: A library for integrating ImageJ and Python.Nat Methods2022
37655209Imaging flow cytometry: a primer.Nat Rev Methods Primers2022
35063094The new era of quantitative cell imaging-challenges and opportunities.Mol Cell2022
34910584A multiparametric activity profiling platform for neuron disease phenotyping and drug screening.Mol Biol Cell2022
35213530Predicting drug polypharmacology from cell morphology readouts using variational autoencoder latent space arithmetic.PLoS Comput Biol2022
37655209Imaging flow cytometry: a primer.Nat Rev Methods Primers2022
35353015Cell Painting predicts impact of lung cancer variants.Mol Biol Cell2022
353873172020 BioImage Analysis Survey: Community experiences and needs for the future.Biol Imaging2022
36304163<i>In vitro</i> neutrophil migration is associated with inhaled corticosteroid treatment and serum cytokines in pediatric asthma.Front Pharmacol2022
36063089Why I shrank my lab by half.Elife2022
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Collaborators

Shantanu Singh
Co-authored papers 41
Mark-Anthony Bray
Co-authored papers 26
David M Sabatini
Whitehead Institute for Biomedical Research and Massachusetts Institute of Technology
Co-authored papers 13
Lee Kamentsky
Picower Institute for Learning and Memory, Massachusetts Institute of Technology
Co-authored papers 9
Kevin W Eliceiri
University of Wisconsin-Madison
Co-authored papers 9
Paul A Clemons
Broad Institute
Co-authored papers 8
David E Root
Broad Institute of Harvard and MIT
Co-authored papers 8
Stuart L Schreiber
Broad Institute
Co-authored papers 6
Polina Golland
Massachusetts Institute of Technology
Co-authored papers 6
Maria Kost-Alimova
Co-authored papers 5
Andrew S Belmont
Co-authored papers 5
Vlado Dan????k
Broad Institute
Co-authored papers 4
Carolina W??hlby
Uppsala University
Co-authored papers 4
Sangeeta N Bhatia
Brigham and Women's Hospital and Harvard Medical School
Co-authored papers 4
Todd R Golub
Broad Institute of MIT and Harvard
Co-authored papers 4
Melina Claussnitzer
Broad Institute of MIT and Harvard
Co-authored papers 4
Alykhan F Shamji
Center for the Science of Therapeutics, Broad Institute
Co-authored papers 4
William C Hahn
Broad Institute of MIT and Harvard, USA Dana-Farber Cancer Institute
Co-authored papers 4
Gregory P Way
Broad Institute of MIT and Harvard
Co-authored papers 4
Serena J Silver
Co-authored papers 3
Benjamin L Ebert
Co-authored papers 3
Xiaoyun Wu
Co-authored papers 3
Federica Piccioni
Co-authored papers 3
Bridget K Wagner
Co-authored papers 3
Jesse S Boehm
Broad Institute of Harvard and MIT
Co-authored papers 3
Jason Moffat
University of Toronto
Co-authored papers 3
Joshua A Bittker
Co-authored papers 3
Jonas Sieber
Co-authored papers 2
Anna Greka
Co-authored papers 2
F??tima Al-Shahrour
Spanish National Cancer Research Centre (CNIO)
Co-authored papers 2
Release 1.2