Author details

Full Name

Gregory E Crawford

Affiliation

Center for Genomic & Computational Biology, Duke University

ORCID

Career Start Year

1999

Papers

131

H Index

Expertise

CM4AI Collaborator

Nathan Sheffield (CM4AI)

PMID	Paper Title	Journal Title	Published Year
38059622	Epstein-Barr virus induces germinal center light zone chromatin architecture and promotes survival through enhancer looping at the <i>BCL2A1</i> locus.	mBio	2024
38059622	Epstein-Barr virus induces germinal center light zone chromatin architecture and promotes survival through enhancer looping at the <i>BCL2A1</i> locus.	mBio	2024
37193763	Single cell profiling at the maternal-fetal interface reveals a deficiency of PD-L1<sup>+</sup>â¿¿non-immune cells in human spontaneous preterm labor.	Sci Rep	2023
37645832	Characterization of enhancer activity in early human neurodevelopment using Massively parallel reporter assay (MPRA) and forebrain organoids.	bioRxiv	2023
37789374	Integrative single-nucleus multi-omics analysis prioritizes candidate cis and trans regulatory networks and their target genes in Alzheimer's disease brains.	Cell Biosci	2023
37193763	Single cell profiling at the maternal-fetal interface reveals a deficiency of PD-L1<sup>+</sup>â¿¿non-immune cells in human spontaneous preterm labor.	Sci Rep	2023
37789374	Integrative single-nucleus multi-omics analysis prioritizes candidate cis and trans regulatory networks and their target genes in Alzheimer's disease brains.	Cell Biosci	2023
37645832	Characterization of enhancer activity in early human neurodevelopment using Massively parallel reporter assay (MPRA) and forebrain organoids.	bioRxiv	2023
35134344	Epigenetic basis of oncogenic-Kras-mediated epithelial-cellular proliferation and plasticity.	Dev Cell	2022
35513710	Enhancer selection dictates gene expression responses in remote organs during tissue regeneration.	Nat Cell Biol	2022
35609992	Profiling the quantitative occupancy of myriad transcription factors across conditions by modeling chromatin accessibility data.	Genome Res	2022
35179181	Identification of enhancer regulatory elements that direct epicardial gene expression during zebrafish heart regeneration.	Development	2022
35134344	Epigenetic basis of oncogenic-Kras-mediated epithelial-cellular proliferation and plasticity.	Dev Cell	2022
35609992	Profiling the quantitative occupancy of myriad transcription factors across conditions by modeling chromatin accessibility data.	Genome Res	2022
35513710	Enhancer selection dictates gene expression responses in remote organs during tissue regeneration.	Nat Cell Biol	2022
35179181	Identification of enhancer regulatory elements that direct epicardial gene expression during zebrafish heart regeneration.	Development	2022
34216551	Targeted long-read sequencing identifies missing disease-causing variation.	Am J Hum Genet	2021
34017130	Cell-type-specific effects of genetic variation on chromatin accessibility during human neuronal differentiation.	Nat Neurosci	2021
34216551	Targeted long-read sequencing identifies missing disease-causing variation.	Am J Hum Genet	2021
34429139	Sex dependent glial-specific changes in the chromatin accessibility landscape in late-onset Alzheimer's disease brains.	Mol Neurodegener	2021
34378358	Chromatin Remodeling of Colorectal Cancer Liver Metastasis is Mediated by an HGF-PU.1-DPP4 Axis.	Adv Sci (Weinh)	2021
34378358	Chromatin Remodeling of Colorectal Cancer Liver Metastasis is Mediated by an HGF-PU.1-DPP4 Axis.	Adv Sci (Weinh)	2021
34429139	Sex dependent glial-specific changes in the chromatin accessibility landscape in late-onset Alzheimer's disease brains.	Mol Neurodegener	2021
34017130	Cell-type-specific effects of genetic variation on chromatin accessibility during human neuronal differentiation.	Nat Neurosci	2021
32665240	Identification and requirements of enhancers that direct gene expression during zebrafish fin regeneration.	Development	2020
31961859	Integrative QTL analysis of gene expression and chromatin accessibility identifies multi-tissue patterns of genetic regulation.	PLoS Genet	2020
32665240	Identification and requirements of enhancers that direct gene expression during zebrafish fin regeneration.	Development	2020
33268355	Transcriptome and regulatory maps of decidua-derived stromal cells inform gene discovery in preterm birth.	Sci Adv	2020
31961859	Integrative QTL analysis of gene expression and chromatin accessibility identifies multi-tissue patterns of genetic regulation.	PLoS Genet	2020
33268355	Transcriptome and regulatory maps of decidua-derived stromal cells inform gene discovery in preterm birth.	Sci Adv	2020
31599933	Evaluating Chromatin Accessibility Differences Across Multiple Primate Species Using a Joint Modeling Approach.	Genome Biol Evol	2019
31599933	Evaluating Chromatin Accessibility Differences Across Multiple Primate Species Using a Joint Modeling Approach.	Genome Biol Evol	2019
31644911	The Lineage Determining Factor GRHL2 Collaborates with FOXA1 to Establish a Targetable Pathway in Endocrine Therapy-Resistant Breast Cancer.	Cell Rep	2019
33997167	Integrated chromatin and transcriptomic profiling of patient-derived colon cancer organoids identifies personalized drug targets to overcome oxaliplatin resistance.	Genes Dis	2019
31186305	Open Chromatin Profiling in Adipose Tissue Marks Genomic Regions with Functional Roles in Cardiometabolic Traits.	G3 (Bethesda)	2019
31233101	Comparative Analyses of Chromatin Landscape in White Adipose Tissue Suggest Humans May Have Less Beigeing Potential than Other Primates.	Genome Biol Evol	2019
33997167	Integrated chromatin and transcriptomic profiling of patient-derived colon cancer organoids identifies personalized drug targets to overcome oxaliplatin resistance.	Genes Dis	2019
31644911	The Lineage Determining Factor GRHL2 Collaborates with FOXA1 to Establish a Targetable Pathway in Endocrine Therapy-Resistant Breast Cancer.	Cell Rep	2019
31186305	Open Chromatin Profiling in Adipose Tissue Marks Genomic Regions with Functional Roles in Cardiometabolic Traits.	G3 (Bethesda)	2019
31233101	Comparative Analyses of Chromatin Landscape in White Adipose Tissue Suggest Humans May Have Less Beigeing Potential than Other Primates.	Genome Biol Evol	2019
29429127	Tissue- and strain-specific effects of a genotoxic carcinogen 1,3-butadiene on chromatin and transcription.	Mamm Genome	2018
30545857	Comprehensive functional genomic resource and integrative model for the human brain.	Science	2018
30545853	Transcriptome and epigenome landscape of human cortical development modeled in organoids.	Science	2018
30097539	Glucocorticoid receptor recruits to enhancers and drives activation by motif-directed binding.	Genome Res	2018
30139769	Human cardiac <i>cis</i>-regulatory elements, their cognate transcription factors, and regulatory DNA sequence variants.	Genome Res	2018
30093408	IL-1R signaling promotes STAT3 and NF-ÎºB factor recruitment to distal <i>cis</i>-regulatory elements that regulate <i>Il17a/f</i> transcription.	J Biol Chem	2018
30087329	Evaluation of chromatin accessibility in prefrontal cortex of individuals with schizophrenia.	Nat Commun	2018
30031775	Pre-established Chromatin Interactions Mediate the Genomic Response to Glucocorticoids.	Cell Syst	2018
29524151	Screening Regulatory Element Function with CRISPR/Cas9-based Epigenome Editing.	Methods Mol Biol	2018
29608722	Comparative Serum Challenges Show Divergent Patterns of Gene Expression and Open Chromatin in Human and Chimpanzee.	Genome Biol Evol	2018

1 - 50 of 262

Yunjiang Qiu

Ludwig Institute for Cancer Research, University of California

Career Start Year 2015

Number of shared co-authors 9

Maxwell R Mumbach

Broad Institute of MIT and Harvard

Career Start Year 2013

Number of shared co-authors 7

Vanja Haberle

Research Institute of Molecular Pathology (IMP)

Career Start Year 2012

Number of shared co-authors 7

Yupeng He

Salk Institute for Biological Studies

Career Start Year 2012

Number of shared co-authors 21

Kai Zhang

University of California

Career Start Year 2011

Number of shared co-authors 2

Morana Vitezic

University of Copenhagen

Career Start Year 2010

Number of shared co-authors 7

Greg Donahue

Penn Epigenetics Institute, Perelman School of Medicine, University of Pennsylvania

Career Start Year 2010

Number of shared co-authors 0

Michael J Guertin

Center for Cell Analysis and Modeling, University of Connecticut

Career Start Year 2010

Number of shared co-authors 3

Jason D Buenrostro

Harvard University, Broad Institute of MIT and Harvard

Career Start Year 2010

Number of shared co-authors 11

Piotr J Balwierz

MRC London Institute of Medical Sciences

Career Start Year 2009

Number of shared co-authors 11

Chongzhi Zang

Center for Public Health Genomics, University of Virginia

Career Start Year 2008

Number of shared co-authors 15

Maud de Dieuleveult

ULB-Cancer Research Centre (U-CRC), Universite Libre De Bruxelles

Career Start Year 2008

Number of shared co-authors 4

Robin Andersson

University of Copenhagen

Career Start Year 2007

Number of shared co-authors 7

Altuna Akalin

Berlin Institute for Medical Systems Biology

Career Start Year 2006

Number of shared co-authors 8

Yue Lu

The University of Texas MD Anderson Cancer Center

Career Start Year 2006

Number of shared co-authors 1

David L Corcoran

The University of North Carolina at Chapel Hill

Career Start Year 2005

Number of shared co-authors 13

Christopher Benner

Michigan State University College of Human Medicine

Career Start Year 2004

Number of shared co-authors 14

Mathieu Lupien

Princess Margaret Cancer Research Centre

Career Start Year 2003

Number of shared co-authors 6

Michael J Buck

Jacobs School of Medicine and Biomedical Sciences, University at Buffalo

Career Start Year 2002

Number of shared co-authors 2

Ho-Ryun Chung

Institute of Medical Bioinformatics and Biostatistics, Philipps University of Marburg

Career Start Year 2002

Number of shared co-authors 5

Matthew E Johnson

Center for Spatial and Functional Genomics, Children's Hospital of Philadelphia

Career Start Year 2001

Number of shared co-authors 5

Tarjei S Mikkelsen

Harvard University, USA Broad Institute, USA Harvard Stem Cell Institute

Career Start Year 2001

Number of shared co-authors 38

Guo-Cheng Yuan

Dana-Farber Cancer Institute, Harvard School of Public Health

Career Start Year 2000

Number of shared co-authors 14

Sven Heinz

U.C. San Diego School of Medicine

Career Start Year 2000

Number of shared co-authors 6

Stefan Bekiranov

University of Virginia

Career Start Year 2000

Number of shared co-authors 5

Michael D Wilson

SickKids Research Institute

Career Start Year 2000

Number of shared co-authors 5

Kai Tan

University of Pennsylvania

Career Start Year 1999

Number of shared co-authors 8

Martin Hirst

University of British Columbia

Career Start Year 1998

Number of shared co-authors 44

Jonathan Schug

University of Pennsylvania Perelman School of Medicine

Career Start Year 1997

Number of shared co-authors 1

Howard Y Chang

Center for Personal Dynamic Regulomes, Stanford University

Career Start Year 1992

Number of shared co-authors 29

row(s) 1 - 30 of 30

Lingyun Song

Center for Genomic & Computational Biology, Duke University

Co-authored papers 53

Alexias Safi

Center for Genomic and Computational Biology, Duke University Medical Center

Co-authored papers 31

Terrence S Furey

University of North Carolina at Chapel Hill

Co-authored papers 24

Timothy E Reddy

Co-authored papers 19

Jason D Lieb

The University of Chicago

Co-authored papers 12

Yoichiro Shibata

Center for Genomic and Computational Biology, Duke University.

Co-authored papers 12

Vishwanath R Iyer

Indian Institute of Technology Bombay

Co-authored papers 11

Francis S Collins

University of Michigan ann arbor

Co-authored papers 10

Ewan Birney

European Bioinformatics Institute

Co-authored papers 10

Bum-Kyu Lee

Cancer Research Center, University at Albany, State University of New York

Co-authored papers 9

Zhiping Weng

University of Massachusetts Medical School

Co-authored papers 8

Richard M Myers

HudsonAlpha Institute for Biotechnology

Co-authored papers 8

John A Stamatoyannopoulos

Altius Institute for Biomedical Sciences

Co-authored papers 7

Alan P Boyle

University of Michigan ann arbor

Co-authored papers 7

Bing Ren

Center for Epigenomics, University of California San Diego

Co-authored papers 7

Peter C Scacheri

Case Western Reserve University School of Medicine

Co-authored papers 7

Mark Gerstein

Yale University

Co-authored papers 6

Allison E Ashley-Koch

Co-authored papers 6

Darin London

Co-authored papers 6

Paul Flicek

European Bioinformatics Institute

Co-authored papers 6

Sean Davis

Johns Hopkins School of Medicine, National Cancer Institute, Princeton University, University of Colorado Anschutz Medical Campus, University of Pittsburgh, University of Washington

Co-authored papers 6

Susan R Davis

Co-authored papers 6

Elliott H Margulies

National Human Genome Research Institute, National Institutes of Health

Co-authored papers 6

Nathan Sheffield (CM4AI)

University of Virginia

Co-authored papers 6

Gregory A Wray

Duke University

Co-authored papers 6