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Author Details

Justin Elser
Oregon State University
2008
27
17
PMIDPaper TitleJournal TitlePublished Year
37986220Plant Reactome Knowledgebase: empowering plant pathway exploration and OMICS data analysis.Nucleic Acids Res2024
38055832Planteome 2024 Update: Reference Ontologies and Knowledgebase for Plant Biology.Nucleic Acids Res2024
36866529The Gene Ontology knowledgebase in 2023.Genetics2023
37971715Data sharing and ontology use among agricultural genetics, genomics, and breeding databases and resources of the Agbiodata Consortium.Database (Oxford)2023
37384147Using knowledge graphs to infer gene expression in plants.Front Artif Intell2023
37299125Biocuration of a Transcription Factors Network Involved in Submergence Tolerance during Seed Germination and Coleoptile Elongation in Rice (<i>Oryza sativa</i>).Plants (Basel)2023
34791415Ensembl Genomes 2022: an expanding genome resource for non-vertebrates.Nucleic Acids Res2022
35037224Plant Reactome and PubChem: The Plant Pathway and (Bio)Chemical Entity Knowledgebases.Methods Mol Biol2022
33170273Gramene 2021: harnessing the power of comparative genomics and pathways for plant research.Nucleic Acids Res2021
33605092A draft phased assembly of the diploid Cascade hop (Humulus lupulus) genome.Plant Genome2021
31680153Plant Reactome: a knowledgebase and resource for comparative pathway analysis.Nucleic Acids Res2020
31214208The Plant Ontology Facilitates Comparisons of Plant Development Stages Across Species.Front Plant Sci2019
29186578The Planteome database: an integrated resource for reference ontologies, plant genomics and phenomics.Nucleic Acids Res2018
29165610Gramene 2018: unifying comparative genomics and pathway resources for plant research.Nucleic Acids Res2018
27799469Plant Reactome: a resource for plant pathways and comparative analysis.Nucleic Acids Res2017
26973684FragariaCyc: A Metabolic Pathway Database for Woodland Strawberry Fragaria vesca.Front Plant Sci2016
26553803Gramene 2016: comparative plant genomics and pathway resources.Nucleic Acids Res2016
26801645Differential Expression of Genes Involved in Host Recognition, Attachment, and Degradation in the Mycoparasite Tolypocladium ophioglossoides.G3 (Bethesda)2016
24919147The genome of Eucalyptus grandis.Nature2014
25538713VitisCyc: a metabolic pathway knowledgebase for grapevine (Vitis vinifera).Front Plant Sci2014
24821410De novo transcriptome assembly and analyses of gene expression during photomorphogenesis in diploid wheat Triticum monococcum.PLoS One2014
23220694The plant ontology as a tool for comparative plant anatomy and genomic analyses.Plant Cell Physiol2013
24280312WikiPathways for plants: a community pathway curation portal and a case study in rice and arabidopsis seed development networks.Rice (N Y)2013
23818858The genome of tolypocladium inflatum: evolution, organization, and expression of the cyclosporin biosynthetic gene cluster.PLoS Genet2013
22847540Ontologies as integrative tools for plant science.Am J Bot2012
21186353The genome of woodland strawberry (Fragaria vesca).Nat Genet2011
18352493Scattering-free plasmonic optics with anisotropic metamaterials.Phys Rev Lett2008
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Collaborators

Pankaj Jaiswal
Oregon State University
Co-authored papers 22
Sushma Naithani
Oregon State University
Co-authored papers 15
Justin Preece
Oregon State University
Co-authored papers 12
Laurel Cooper
Oregon State University
Co-authored papers 8
Peter D'Eustachio
NYU Grossman School of Medicine
Co-authored papers 8
Doreen Ware
USDA ARS NAA Robert W. Holley Center for Agriculture and Health
Co-authored papers 6
Marcela K Tello-Ruiz
State University of New York at Old Westbury
Co-authored papers 5
Christopher J Mungall
International Society for Biocuration, Lawrence Berkeley National Laboratory, University of Edinburgh, University of Edinburgh School of Biological Sciences
Co-authored papers 5
Lincoln Stein
Ontario Institute for Cancer Research, University Avenue
Co-authored papers 5
Barry Smith
University at Buffalo
Co-authored papers 4
Paul Kersey
European Bioinformatics Institute
Co-authored papers 4
Dennis W Stevenson
University of British Columbia
Co-authored papers 4
Antonio Fabregat
Co-authored papers 4
Vivek Kumar
Co-authored papers 3
Maria Keays
Wellcome Sanger Institute
Co-authored papers 3
Robert Petryszak
Oregon Health and Science University
Co-authored papers 3
Ramona L Walls
Critical Path Institute
Co-authored papers 3
Tanya Z Berardini
Carnegie Institution for Science
Co-authored papers 3
Marie-Ang??lique Laporte
Co-authored papers 3
Irene Papatheodorou
Co-authored papers 3
Maria A Gandolfo
Cornell University
Co-authored papers 3
James Thomason
USDA-ARS Laboratory at Cold Spring Harbor Laboratory
Co-authored papers 2
Laura Huerta
Co-authored papers 2
Nuno A Fonseca
European Bioinformatics Institute
Co-authored papers 2
Sunita Kumari
Manav Rachna International Institute of Research and Studies
Co-authored papers 2
Alayne Cuzick
Rothamsted Research
Co-authored papers 2
Anne E Thessen
Biodiversity Information Standards, Coastal and Estuarine Research Federation, Oregon State University, Phycological Society of America, Society of Professional Consultants, The Data Detektiv, University of Colorado Anschutz Medical Campus, University of Maryland College Park, Women in the Enterprise of Science and Technology
Co-authored papers 2
Seth Carbon
Lawrence Berkeley National Laboratory
Co-authored papers 2
Balaji Athreya
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