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Author Details

Matthew Pocock
Newcastle University
1998
41
16
PMIDPaper TitleJournal TitlePublished Year
35879662Integration of probabilistic functional networks without an external Gold Standard.BMC Bioinformatics2022
34098590Synthetic biology open language visual (SBOL Visual) version 2.3.J Integr Bioinform2021
32129980ShortBOL: A Language for Scripting Designs for Engineered Biological Systems Using Synthetic Biology Open Language (SBOL).ACS Synth Biol2020
32543457Synthetic biology open language visual (SBOL visual) version 2.2.J Integr Bioinform2020
31199768Synthetic Biology Open Language Visual (SBOL Visual) Version 2.1.J Integr Bioinform2019
31348656Communicating Structure and Function in Synthetic Biology Diagrams.ACS Synth Biol2019
31260271Specifying Combinatorial Designs with the Synthetic Biology Open Language (SBOL).ACS Synth Biol2019
31199770Synthetic Biology Open Language (SBOL) Version 2.3.J Integr Bioinform2019
29605823Synthetic Biology Open Language (SBOL) Version 2.2.0.J Integr Bioinform2018
29549707Synthetic Biology Open Language Visual (SBOL Visual) Version 2.0.J Integr Bioinform2018
27110921Data Integration and Mining for Synthetic Biology Design.ACS Synth Biol2016
28187407Synthetic Biology Open Language (SBOL) Version 2.1.0.J Integr Bioinform2016
26559508Annotation of rule-based models with formal semantics to enable creation, analysis, reuse and visualization.Bioinformatics2016
27268205The SBOL Stack: A Platform for Storing, Publishing, and Sharing Synthetic Biology Designs.ACS Synth Biol2016
26808703VisBOL: Web-Based Tools for Synthetic Biology Design Visualization.ACS Synth Biol2016
27111421Sharing Structure and Function in Biological Design with SBOL 2.0.ACS Synth Biol2016
24896221Proposed data model for the next version of the synthetic biology open language.ACS Synth Biol2015
26633141SBOL Visual: A Graphical Language for Genetic Designs.PLoS Biol2015
26528570Synthetic Biology Open Language (SBOL) Version 2.0.0.J Integr Bioinform2015
25487105The synthetic biology open language.Methods Mol Biol2015
24911500The Synthetic Biology Open Language (SBOL) provides a community standard for communicating designs in synthetic biology.Nat Biotechnol2014
23571273BacillOndex: an integrated data resource for systems and synthetic biology.J Integr Bioinform2013
23001322Microbase2.0: a generic framework for computationally intensive bioinformatics workflows in the cloud.J Integr Bioinform2012
21414991Customizable views on semantically integrated networks for systems biology.Bioinformatics2011
22027554Controlled vocabularies and semantics in systems biology.Mol Syst Biol2011
20375448An integrated dataset for in silico drug discovery.J Integr Bioinform2010
20727200The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows. The DBCLS BioHackathon Consortium*.J Biomed Semantics2010
20626923Annotation of SBML models through rule-based semantic integration.J Biomed Semantics2010
19441879Modeling and managing experimental data using FuGE.OMICS2009
19734151Saint: a lightweight integration environment for model annotation.Bioinformatics2009
18687127Performing statistical analyses on quantitative data in Taverna workflows: an example using R and maxdBrowse to identify differentially-expressed genes from microarray data.BMC Bioinformatics2008
18689808BioJava: an open-source framework for bioinformatics.Bioinformatics2008
17674626Exploring microbial genome sequences to identify protein families on the grid.IEEE Trans Inf Technol Biomed2007
16845108Taverna: a tool for building and running workflows of services.Nucleic Acids Res2006
16288871The differential gene expression profiles of proximal and distal muscle groups are altered in pre-pathological dysferlin-deficient mice.Neuromuscul Disord2005
15201187Taverna: a tool for the composition and enactment of bioinformatics workflows.Bioinformatics2004
18629137Ontology for genome comparison and genomic rearrangements.Comp Funct Genomics2004
11752248The Ensembl genome database project.Nucleic Acids Res2002
12368254The Bioperl toolkit: Perl modules for the life sciences.Genome Res2002
10869040A browser for expression data.Bioinformatics2000
9918956SPEM: a parser for EMBL style flat file database entries.Bioinformatics1998
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Collaborators

Kevin Clancy
Co-authored papers 14
James Alastair McLaughlin
European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 12
Nicolas Le Nov??re
Babraham Institute
Co-authored papers 7
John H Gennari
University of Washington
Co-authored papers 6
Augustin Luna
Harvard Medical School
Co-authored papers 5
Phillip Lord
Newcastle University
Co-authored papers 5
Allyson L Lister
Oxford e-Research Centre, University of Oxford
Co-authored papers 4
Martin Senger
DKFZ - German Cancer Research Center
Co-authored papers 3
Tim Hubbard
Co-authored papers 3
Ewan Birney
European Bioinformatics Institute
Co-authored papers 3
Jacqueline Y Quinn
Autodesk Inc.
Co-authored papers 3
Heikki Lehv??slaiho
CSC-IT Center for Science
Co-authored papers 3
Elia Stupka
Center for Omics Sciences, IRCCS San Raffaele Scientific Institute
Co-authored papers 2
Michal Galdzicki
University of Washington
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Robert Stevens
The University of Manchester
Co-authored papers 2
Mark D Wilkinson
Universidad Politecnica de Madrid (UPM)
Co-authored papers 2
James G R Gilbert
Wellcome Sanger Institute
Co-authored papers 2
Thomas A Down
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Nathan J Hillson
Lawrence Berkeley National Laboratory
Co-authored papers 2
Hilmar Lapp
Duke University
Co-authored papers 2
Douglas B Kell
Novo Nordisk Foundation Centre for Biosustainability, Technical University of Denmark
Co-authored papers 2
Richard Holland
Eagle Genomics Ltd
Co-authored papers 2
Carole Goble
University of Manchester
Co-authored papers 2
Richard Durbin
University of Cambridge
Co-authored papers 1
Jan Aerts
Co-authored papers 1
René Ranzinger
Co-authored papers 1
Leandro C Hermida
University of Pittsburgh
Co-authored papers 1
Christian M Zmasek
J. Craig Venter Institute
Co-authored papers 1
Frank Gibson
Newcastle University
Co-authored papers 1
Imre Västrik
Co-authored papers 1
Release 1.2