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Author Details

Ali Bashashati
University of British Columbia
2004
69
36
PMIDPaper TitleJournal TitlePublished Year
37945099Artificial Intelligence and Pathomics: Prostate Cancer.Urol Clin North Am2024
37321155Harmonized molecular classification; assessment of a single-test ProMisE NGS tool.Gynecol Oncol2023
34543435The utility of color normalization for AI-based diagnosis of hematoxylin and eosin-stained pathology images.J Pathol2022
35383423Gastrointestinal symptoms and the severity of COVID-19: Disorders of gut-brain interaction are an outcome.Neurogastroenterol Motil2022
35380993Tumor-associated antigen PRAME exhibits dualistic functions that are targetable in diffuse large B cell lymphoma.J Clin Invest2022
36065012Deep learning-based histotype diagnosis of ovarian carcinoma whole-slide pathology images.Mod Pathol2022
35277666AI for prostate cancer diagnosis - hype or today's reality?Nat Rev Urol2022
33428330Adult-type granulosa cell tumor of the ovary: a FOXL2-centric disease.J Pathol Clin Res2021
34112957Deep-learning based classification distinguishes sarcomatoid malignant mesotheliomas from benign spindle cell mesothelial proliferations.Mod Pathol2021
32737030Endometrial Cancer Molecular Risk Stratification is Equally Prognostic for Endometrioid Ovarian Carcinoma.Clin Cancer Res2020
31846526The coming 15 years in gynaecological pathology: digitisation, artificial intelligence, and new technologies.Histopathology2020
32094924TMEM30A loss-of-function mutations drive lymphomagenesis and confer therapeutically exploitable vulnerability in B-cell lymphoma.Nat Med2020
32686118Synthesis of diagnostic quality cancer pathology images by generative adversarial networks.J Pathol2020
30523716Double-Hit Gene Expression Signature Defines a Distinct Subgroup of Germinal Center B-Cell-Like Diffuse Large B-Cell Lymphoma.J Clin Oncol2019
29968850Correction: TERT promoter mutation in adult granulosa cell tumor of the ovary.Mod Pathol2019
31340883Molecular profiling and molecular classification of endometrioid ovarian carcinomas.Gynecol Oncol2019
30705065Molecular and Genetic Characterization of MHC Deficiency Identifies EZH2 as Therapeutic Target for Enhancing Immune Recognition.Cancer Discov2019
31088846Targeting Hypoxia-Induced Carbonic Anhydrase IX Enhances Immune-Checkpoint Blockade Locally and Systemically.Cancer Immunol Res2019
30794536Integrated structural variation and point mutation signatures in cancer genomes using correlated topic models.PLoS Comput Biol2019
31078621Regulation of pH by Carbonic Anhydrase 9 Mediates Survival of Pancreatic Cancer Cells With Activated KRAS in Response to Hypoxia.Gastroenterology2019
29754820Interfaces of Malignant and Immunologic Clonal Dynamics in Ovarian Cancer.Cell2018
29449679TERT promoter mutation in adult granulosa cell tumor of the ovary.Mod Pathol2018
28655203Kronos: a workflow assembler for genome analytics and informatics.Gigascience2017
28436987Genomic consequences of aberrant DNA repair mechanisms stratify ovarian cancer histotypes.Nat Genet2017
28334900CDK12 regulates alternative last exon mRNA splicing and promotes breast cancer cell invasion.Nucleic Acids Res2017
28351934Genetic profiling of <i>MYC</i> and <i>BCL2</i> in diffuse large B-cell lymphoma determines cell-of-origin-specific clinical impact.Blood2017
29032825LINE-1 retrotransposon-mediated DNA transductions in endometriosis associated ovarian cancers.Gynecol Oncol2017
29026114The driver landscape of sporadic chordoma.Nat Commun2017
26824461User-customized brain computer interfaces using Bayesian optimization.J Neural Eng2016
26365879The genomic landscape of epithelioid sarcoma cell lines and tumours.J Pathol2016
27959929Histological Transformation and Progression in Follicular Lymphoma: A Clonal Evolution Study.PLoS Med2016
27412862Robust high-performance nanoliter-volume single-cell multiple displacement amplification on planar substrates.Proc Natl Acad Sci U S A2016
27182968Divergent modes of clonal spread and intraperitoneal mixing in high-grade serous ovarian cancer.Nat Genet2016
26832771Synchronous Endometrial and Ovarian Carcinomas: Evidence of Clonality.J Natl Cancer Inst2016
25395426An RCOR1 loss-associated gene expression signature identifies a prognostically significant DLBCL subgroup.Blood2015
26436532Systematic analysis of somatic mutations impacting gene expression in 12 tumour types.Nat Commun2015
26090799Comparing Different Classifiers in Sensory Motor Brain Computer Interfaces.PLoS One2015
25692284Multifocal endometriotic lesions associated with cancer are clonal and carry a high mutation burden.J Pathol2015
25470049Dynamics of genomic clones in breast cancer patient xenografts at single-cell resolution.Nature2015
25060187TITAN: inference of copy number architectures in clonal cell populations from tumor whole-genome sequence data.Genome Res2014
23780408Distinct evolutionary trajectories of primary high-grade serous ovarian cancers revealed through spatial mutational profiling.J Pathol2013
22180480Automated analysis of multidimensional flow cytometry data improves diagnostic accuracy between mantle cell lymphoma and small lymphocytic lymphoma.Am J Clin Pathol2012
23383675DriverNet: uncovering the impact of somatic driver mutations on transcriptional networks in cancer.Genome Biol2012
22523221B cells with high side scatter parameter by flow cytometry correlate with inferior survival in diffuse large B-cell lymphoma.Am J Clin Pathol2012
22522925The genomic and transcriptomic architecture of 2,000 breast tumours reveals novel subgroups.Nature2012
22495314The clonal and mutational evolution spectrum of primary triple-negative breast cancers.Nature2012
22637570Integrative analysis of genome-wide loss of heterozygosity and monoallelic expression at nucleotide resolution reveals disrupted pathways in triple-negative breast cancer.Genome Res2012
22285562JointSNVMix: a probabilistic model for accurate detection of somatic mutations in normal/tumour paired next-generation sequencing data.Bioinformatics2012
22084253Feature-based classifiers for somatic mutation detection in tumour-normal paired sequencing data.Bioinformatics2012
19899135Per-channel basis normalization methods for flow cytometry data.Cytometry A2010
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Collaborators

Sohrab P Shah
Memorial Sloan Kettering Cancer Center
Co-authored papers 34
David G Huntsman
University of British Columbia
Co-authored papers 23
Marco A Marra
University of British Columbia
Co-authored papers 16
Cyril B Gilks
University of British Columbia
Co-authored papers 14
Samuel Aparicio
University of British Columbia
Co-authored papers 14
Jamie Rosner
University of British Columbia
Co-authored papers 9
Janine Senz
University of British Columbia
Co-authored papers 9
Ryan R Brinkman
University of British Columbia
Co-authored papers 8
David W Scott
University of British Columbia
Co-authored papers 8
Ryan D Morin
Simon Fraser University
Co-authored papers 8
Michael S Anglesio
University of British Columbia
Co-authored papers 7
Andrew McPherson
Memorial Sloan Kettering Cancer Center
Co-authored papers 7
Martin Hirst
University of British Columbia
Co-authored papers 6
Andrew J Mungall
Co-authored papers 6
Richard A Moore
Co-authored papers 6
Leah M Prentice
British Columbia Women's Hospital and Health Centre
Co-authored papers 6
Carlos Caldas
Cancer Research UK Cambridge Institute, University of Cambridge
Co-authored papers 5
Stefan Kommoss
Eberhard Karls University Tubingen
Co-authored papers 5
Diljot Grewal
Memorial Sloan Kettering Cancer Center
Co-authored papers 5
Mohamed R Aniba
Telethon Kids Institute
Co-authored papers 5
Steven J M Jones
University of British Columbia
Co-authored papers 5
Cydney B Nielsen
Co-authored papers 4
Derek S Chiu
University of British Columbia, and Vancouver General Hospital
Co-authored papers 3
Naveena Singh
Barts Health NHS Trust
Co-authored papers 3
Yongjun Zhao
Canada British Columbia Cancer Research Centre, University of British Columbia
Co-authored papers 3
Tayyebeh M Nazeran
University of British Columbia
Co-authored papers 3
Martin K??bel
University of Calgary
Co-authored papers 3
Steve E Kalloger
University of British Columbia
Co-authored papers 3
Raphael Gottardo
Fred Hutchinson Cancer Center
Co-authored papers 3
Aline Talhouk
The University of British Columbia
Co-authored papers 3
Release 1.2