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Author Details

David J Weston
Oak Ridge National Laboratory
2006
78
29
PMIDPaper TitleJournal TitlePublished Year
38052496Engineering Crassulacean Acid Metabolism in C<sub>3</sub> and C<sub>4</sub> Plants.Cold Spring Harb Perspect Biol2024
36828391Viral infections likely mediate microbial controls on ecosystem responses to global warming.FEMS Microbiol Ecol2023
37526283JGI Plant Gene Atlas: an updateable transcriptome resource to improve functional gene descriptions across the plant kingdom.Nucleic Acids Res2023
37589594Predicted structural proteome of Sphagnum divinum and proteome-scale annotation.Bioinformatics2023
37417448Clonality, local population structure and gametophyte sex ratios in cryptic species of the Sphagnum magellanicum complex.Ann Bot2023
37386471A rapid assay for assessing bacterial effects on Arabidopsis thermotolerance.Plant Methods2023
37478307Divergent selection and climate adaptation fuel genomic differentiation between sister species of Sphagnum (peat moss).Ann Bot2023
36999440Climate drivers alter nitrogen availability in surface peat and decouple N<sub>2</sub> fixation from CH<sub>4</sub> oxidation in the Sphagnum moss microbiome.Glob Chang Biol2023
36747050Newly identified sex chromosomes in the Sphagnum (peat moss) genome alter carbon sequestration and ecosystem dynamics.Nat Plants2023
36511294A research agenda for nonvascular photoautotrophs under climate change.New Phytol2023
34845335Novel metabolic interactions and environmental conditions mediate the boreal peatmoss-cyanobacteria mutualism.ISME J2022
35669710Reporter genes confer new-to-nature ornamental traits in plants.Hortic Res2022
35524463Plant carbohydrate storage: intra- and inter-specific trade-offs reveal a major life history trait.New Phytol2022
35971292Phylogenomic structure and speciation in an emerging model: the Sphagnum magellanicum complex (Bryophyta).New Phytol2022
36069554Draft Metagenome Sequences of the <i>Sphagnum</i> (Peat Moss) Microbiome from Ambient and Warmed Environments across Europe.Microbiol Resour Announc2022
35266150Habitat-adapted microbial communities mediate Sphagnum peatmoss resilience to warming.New Phytol2022
33135060amPEPpy 1.0: a portable and accurate antimicrobial peptide prediction tool.Bioinformatics2021
37849951Biological Parts for Plant Biodesign to Enhance Land-Based Carbon Dioxide Removal.Biodes Res2021
36267144Nitrogen and phosphorus cycling in an ombrotrophic peatland: a benchmark for assessing change.Plant Soil2021
33681996Extensive Genome-Wide Phylogenetic Discordance Is Due to Incomplete Lineage Sorting and Not Ongoing Introgression in a Rapidly Radiated Bryophyte Genus.Mol Biol Evol2021
33598120Bringing function to structure: Root-soil interactions shaping phosphatase activity throughout a soil profile in Puerto Rico.Ecol Evol2021
34272872The physiological acclimation and growth response of Populus trichocarpa to warming.Physiol Plant2021
34156297Cultivating the Bacterial Microbiota of <i>Populus</i> Roots.mSystems2021
32220321A New Perspective on Ecological Prediction Reveals Limits to Climate Adaptation in a Temperate Tree Species.Curr Biol2020
37849902Biosystems Design to Accelerate C<sub>3</sub>-to-CAM Progression.Biodes Res2020
37849899Plant Biosystems Design Research Roadmap 1.0.Biodes Res2020
33111101Protocol for Projecting Allele Frequency Change under Future Climate Change at Adaptive-Associated Loci.STAR Protoc2020
32809053Tradeoffs between phenotypic plasticity and local adaptation influence the ecophysiology of the moss, Sphagnum magellanicum.Oecologia2020
32645485Phylogenomics reveals convergent evolution of red-violet coloration in land plants and the origins of the anthocyanin biosynthetic pathway.Mol Phylogenet Evol2020
32149021DISCo-microbe: design of an identifiable synthetic community of microbes.PeerJ2020
30534702Towards resolving the spatial metabolome with unambiguous molecular annotations in complex biological systems by coupling mass spectrometry imaging with structures for lossless ion manipulations.Chem Commun (Camb)2019
31657872Relatively rare root endophytic bacteria drive plant resource allocation patterns and tissue nutrient concentration in unpredictable ways.Am J Bot2019
31148286Experimental warming alters the community composition, diversity, and N<sub>2</sub> fixation activity of peat moss (Sphagnum fallax) microbiomes.Glob Chang Biol2019
30971209Correction to: Diel rewiring and positive selection of ancient plant proteins enabled evolution of CAM photosynthesis in Agave.BMC Genomics2019
29076547The Sphagnome Project: enabling ecological and evolutionary insights through a genus-level sequencing project.New Phytol2018
30081833Diel rewiring and positive selection of ancient plant proteins enabled evolution of CAM photosynthesis in Agave.BMC Genomics2018
30217851Diversity of Active Viral Infections within the Sphagnum Microbiome.Appl Environ Microbiol2018
29979655KBase: The United States Department of Energy Systems Biology Knowledgebase.Nat Biotechnol2018
29404422Abiotic Stresses Shift Belowground <i>Populus</i>-Associated Bacteria Toward a Core Stress Microbiome.mSystems2018
29210566Multimodal MSI in Conjunction with Broad Coverage Spatially Resolved MS<sup>2</sup> Increases Confidence in Both Molecular Identification and Localization.Anal Chem2018
27870067Informing models through empirical relationships between foliar phosphorus, nitrogen and photosynthesis across diverse woody species in tropical forests of Panama.New Phytol2017
29163572Root and Rhizosphere Bacterial Phosphatase Activity Varies with Tree Species and Soil Phosphorus Availability in Puerto Rico Tropical Forest.Front Plant Sci2017
28667112Molybdenum-Based Diazotrophy in a Sphagnum Peatland in Northern Minnesota.Appl Environ Microbiol2017
26900928Analyses of transcriptome sequences reveal multiple ancient large-scale duplication events in the ancestor of Sphagnopsida (Bryophyta).New Phytol2016
27791023Microbial-type terpene synthase genes occur widely in nonseed land plants, but not in seed plants.Proc Natl Acad Sci U S A2016
27869799Transcript, protein and metabolite temporal dynamics in the CAM plant Agave.Nat Plants2016
27833797Root bacterial endophytes alter plant phenotype, but not physiology.PeerJ2016
27200001Two Poplar-Associated Bacterial Isolates Induce Additive Favorable Responses in a Constructed Plant-Microbiome System.Front Plant Sci2016
27173909The Sphagnum microbiome: new insights from an ancient plant lineage.New Phytol2016
27148182A Carotenoid-Deficient Mutant in Pantoea sp. YR343, a Bacteria Isolated from the Rhizosphere of Populus deltoides, Is Defective in Root Colonization.Front Microbiol2016
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Collaborators

Pondicherry University
Co-authored papers 7
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Co-authored papers 3
Oak Ridge National Laboratory
Co-authored papers 3
Pacific Northwest National Laboratory
Co-authored papers 3
Co-authored papers 2
Co-authored papers 2
Co-authored papers 2
US Department of Energy, Joint Genome Institute
Co-authored papers 2
US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory
Co-authored papers 2
Oak Ridge National Laboratory
Co-authored papers 2
Co-authored papers 1
University of California davis
Co-authored papers 1
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Oak Ridge National Laboratory
Co-authored papers 1
Argonne National Laboratory
Co-authored papers 1
Co-authored papers 1
University of Missouri
Co-authored papers 1
University of Michigan ann arbor
Co-authored papers 1
US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory
Co-authored papers 1
Kangbuk Samsung Hospital, Sungkyunkwan University School of Medicine
Co-authored papers 1
E.O. Lawrence Berkeley National Laboratory
Co-authored papers 1
Lawrence Berkeley National Laboratory
Co-authored papers 1
Oak Ridge National Laboratory
Co-authored papers 1
Institute of Genetics and Developmental Biology, Chinese Academy of Sciences
Co-authored papers 1
Oak Ridge National Laboratory
Co-authored papers 1
Brookhaven National Laboratory
Co-authored papers 1
University of Chicago
Co-authored papers 1
Danforth Foundation
Co-authored papers 1
Institute for Artificial Intelligence, University of Duisburg-Essen
Co-authored papers 1