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Author Details

Karen E Nelson
J. Craig Venter Institute, 9605 Medical Center Drive
1995
234
85
PMIDPaper TitleJournal TitlePublished Year
37317139MPrESS: An R-Package for Accurately Predicting Power for Comparisons of 16S rRNA Microbiome Taxa Distributions including Simulation by Dirichlet Mixture Modeling.Microorganisms2023
37528343Common antibiotics, azithromycin and amoxicillin, affect gut metagenomics within a household.BMC Microbiol2023
35048077Tetramic Acids Mutanocyclin and Reutericyclin A, Produced by <i>Streptococcus mutans</i> Strain B04Sm5 Modulate the Ecology of an <i>in vitro</i> Oral Biofilm.Front Oral Health2022
36518275Insights into the vaginal microbiome in a diverse group of women of African, Asian and European ancestries.PeerJ2022
36712365Differential network analysis of oral microbiome metatranscriptomes identifies community scale metabolic restructuring in dental caries.PNAS Nexus2022
36539474Author Correction: Sampling from four geographically divergent young female populations demonstrates forensic geolocation potential in microbiomes.Sci Rep2022
36329122Sampling from four geographically divergent young female populations demonstrates forensic geolocation potential in microbiomes.Sci Rep2022
33824448Antibiotics at birth and later antibiotic courses: effects on gut microbiota.Pediatr Res2022
33818222Gut microbiome differences between amyotrophic lateral sclerosis patients and spouse controls.Amyotroph Lateral Scler Frontotemporal Degener2022
32239170Vertical Transmission of Gut Microbiome and Antimicrobial Resistance Genes in Infants Exposed to Antibiotics at Birth.J Infect Dis2021
33731474Erratum for Gomez et al., "Plasticity in the Human Gut Microbiome Defies Evolutionary Constraints".mSphere2021
33780444Predicting antimicrobial mechanism-of-action from transcriptomes: A generalizable explainable artificial intelligence approach.PLoS Comput Biol2021
33833745Forensic Microbiome Database: A Tool for Forensic Geolocation Meta-Analysis Using Publicly Available 16S rRNA Microbiome Sequencing.Front Microbiol2021
34389536Coral microbiome manipulation elicits metabolic and genetic restructuring to mitigate heat stress and evade mortality.Sci Adv2021
34249966Urethral Catheter Biofilms Reveal Plasticity in Bacterial Composition and Metabolism and Withstand Host Immune Defenses in Hypoxic Environment.Front Med (Lausanne)2021
33317323Advances in Microbiome Research for Animal Health.Annu Rev Anim Biosci2021
33219400Correction to: Oral Microbial Species and Virulence Factors Associated with Oral Squamous Cell Carcinoma.Microb Ecol2021
33155101Oral Microbial Species and Virulence Factors Associated with Oral Squamous Cell Carcinoma.Microb Ecol2021
33410935Microbial Species that Initially Colonize the Human Gut at Birth or in Early Childhood Can Stay in Human Body for Lifetime.Microb Ecol2021
32974878Protein signatures from blood plasma and urine suggest changes in vascular function and IL-12 signaling in elderly with a history of chronic diseases compared with an age-matched healthy cohort.Geroscience2021
32440698Characterizing Microbial Signatures on Sculptures and Paintings of Similar Provenance.Microb Ecol2021
32459164Inflammatory Networks Linking Oral Microbiome with Systemic Health and Disease.J Dent Res2020
31907190Mechanism-of-Action Classification of Antibiotics by Global Transcriptome Profiling.Antimicrob Agents Chemother2020
31754744Persistent Gut Microbial Dysbiosis in Children with Acute Lymphoblastic Leukemia (ALL) During Chemotherapy.Microb Ecol2020
31924279An unsupervised learning approach to identify novel signatures of health and disease from multimodal data.Genome Med2020
33361321Traditional Human Populations and Nonhuman Primates Show Parallel Gut Microbiome Adaptations to Analogous Ecological Conditions.mSystems2020
32673475Predictive Signatures of 19 Antibiotic-Induced <i>Escherichia coli</i> Proteomes.ACS Infect Dis2020
32439901Microbiome disturbance and resilience dynamics of the upper respiratory tract during influenza A virus infection.Nat Commun2020
32546784Author Correction: Microbiome disturbance and resilience dynamics of the upper respiratory tract during influenza A virus infection.Nat Commun2020
32436334Applications of weighted association networks applied to compositional data in biology.Environ Microbiol2020
32409670Longitudinal Study of Oral Microbiome Variation in Twins.Sci Rep2020
32269338Author Correction: A new antibiotic selectively kills Gram-negative pathogens.Nature2020
30529087A novel approach for the identification and phylogenetic delineation of human Mycoplasma species and strains using genomic segment sequence analysis.Infect Genet Evol2019
31781106Host-Microbial Interactions in Systemic Lupus Erythematosus and Periodontitis.Front Immunol2019
31747680A new antibiotic selectively kills Gram-negative pathogens.Nature2019
29995839Evolutionary trends in host physiology outweigh dietary niche in structuring primate gut microbiomes.ISME J2019
30141127Co-occurrence of Anaerobes in Human Chronic Wounds.Microb Ecol2019
31484056Gut Microbiome-Based Metagenomic Signature for Non-invasive Detection of Advanced Fibrosis in Human Nonalcoholic Fatty Liver Disease.Cell Metab2019
31620923Gastro-intestinal and oral microbiome signatures associated with healthy aging.Geroscience2019
31337807Impact of intrapartum and postnatal antibiotics on the gut microbiome and emergence of antimicrobial resistance in infants.Sci Rep2019
31025322Gut microbiome composition of wild western lowland gorillas is associated with individual age and sex factors.Am J Phys Anthropol2019
30848925Self-Assembled STrap for Global Proteomics and Salivary Biomarker Discovery.J Proteome Res2019
30612540OMeta: an ontology-based, data-driven metadata tracking system.BMC Bioinformatics2019
29345635Genetic risk, dysbiosis, and treatment stratification using host genome and gut microbiome in inflammatory bowel disease.Clin Transl Gastroenterol2018
29963018Relationships Between Gastrointestinal Parasite Infections and the Fecal Microbiome in Free-Ranging Western Lowland Gorillas.Front Microbiol2018
30039863Papio spp. Colon microbiome and its link to obesity in pregnancy.J Med Primatol2018
29899411Spatial and Environmental Variation of the Human Hair Microbiota.Sci Rep2018
30598728Xylitol and sorbitol effects on the microbiome of saliva and plaque.J Oral Microbiol2018
30482830Supragingival Plaque Microbiome Ecology and Functional Potential in the Context of Health and Disease.mBio2018
29531289Microbial metagenome of urinary tract infection.Sci Rep2018
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Collaborators

Claire M Fraser
Institute for Genome Sciences, University of Maryland School of Medicine
Co-authored papers 37
William C Nelson
Pacific Northwest National Laboratory
Co-authored papers 25
Robert J Dodson
Northwestern University Biomedical Informatics Center and Center for Genetic Medicine
Co-authored papers 25
Jonathan A Eisen
McLean Hospital
Co-authored papers 24
Ian T Paulsen
Macquarie University
Co-authored papers 23
Owen White
Institute for Genome Sciences, University of Maryland School of Medicine
Co-authored papers 23
J C Venter
The J. Craig Venter Institute
Co-authored papers 21
Shibu Yooseph
University of Central Florida
Co-authored papers 20
Daniel H Haft
National Center for Biotechnology Information, National Institutes of Health
Co-authored papers 19
Michelle Giglio
University of Maryland School of Medicine, Institute for Genome Sciences
Co-authored papers 14
Jeremy Peterson
The Institute for Genomic Research, 9712 Medical Center Drive
Co-authored papers 14
Weizhong Li
J. Craig Venter Institute
Co-authored papers 14
Steven L Salzberg
Center for Computational Biology, Johns Hopkins University
Co-authored papers 10
Jessica Vamathevan
European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 9
Hamilton O Smith
J. Craig Venter Institute
Co-authored papers 9
Rob Knight
University of California
Co-authored papers 9
Jeremy D Selengut
Craig Venter Institute, 9704 Medical Center Drive
Co-authored papers 8
David A Brenner
Co-authored papers 8
Andrey Tovchigrechko
J. Craig Venter Institute, 9605 Medical Center Dr
Co-authored papers 8
Karen A Ketchum
Yale University School of Medicine
Co-authored papers 7
Tanja M Davidsen
Co-authored papers 7
Rohit Loomba
Co-authored papers 7
Bernd Schnabl
University of California San Diego
Co-authored papers 7
Nikos C Kyrpides
Co-authored papers 6
Bruce W Birren
Broad Institute of MIT and Harvard
Co-authored papers 6
Delwood Richardson
Co-authored papers 6
Jonathan H Badger
Center for Cancer Research, National Cancer Institute, National Institutes of Health
Co-authored papers 5
Samuel V Angiuoli
Personal Genome Diagnostics Inc.
Co-authored papers 5
Granger Sutton
J. Craig Venter Institute
Co-authored papers 5
Dawn Field
Biodiversity Institute, University of Oxford
Co-authored papers 5
Release 1.2