Author details

Full Name

David L Tabb

Affiliation

ORCID

Career Start Year

2000

Papers

116

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
37787899	TopDownApp: An open and modular platform for analysis and visualisation of top-down proteomics data.	Proteomics	2024
36676117	Comparative Proteomics Analysis between Maize and Sorghum Uncovers Important Proteins and Metabolic Pathways Mediating Drought Tolerance.		2023
37327214	MetaNovo: An open-source pipeline for probabilistic peptide discovery in complex metaproteomic datasets.	PLoS Comput Biol	2023
36626722	Proteomics Standards Initiative at Twenty Years: Current Activities and Future Work.	J Proteome Res	2023
37235544	Comparing Top-Down Proteoform Identification: Deconvolution, PrSM Overlap, and PTM Detection.	J Proteome Res	2023
35264249	Correction to: Microbial function and genital inflammation in young South African women at high risk of HIV infection.	Microbiome	2022
36002005	Expansion of nickel binding- and histidine-rich proteins during gastric adaptation of Helicobacter species.	Metallomics	2022
34833116	A Label-Free Proteomic and Complementary Metabolomic Analysis of Leaves of the Resurrection Plant during Dehydration.	Life	2021
33919777	Proteomic Identification and Meta-Analysis in RNA-Seq de novo Assemblies.	Plants	2021
33350981	Dysregulated healing responses in diabetic wounds occur in the early stages postinjury.	Journal of Molecular Endocrinology	2021
33220709	Microbial function and genital inflammation in young South African women at high risk of HIV infection.	Microbiome	2020
32019516	Targeted next-generation sequencing identifies novel variants in candidate genes for Parkinson's disease in Black South African and Nigerian patients.	BMC Med Genet	2020
32415754	Interrogating Fractionation and Other Sources of Variability in Shotgun Proteomes Using Quality Metrics.	Proteomics	2020
33048956	SWATH-MS based proteomic profiling of pancreatic ductal adenocarcinoma tumours reveals the interplay between the extracellular matrix and related intracellular pathways.	PLoS ONE	2020
29706954	A Serum Circulating miRNA Signature for Short-Term Risk of Progression to Active Tuberculosis Among Household Contacts.	Front Immunol	2018
28802010	Quality control in mass spectrometry-based proteomics.	Mass Spectrom Rev	2018
29028897	Sipros Ensemble improves database searching and filtering for complex metaproteomics.	Bioinformatics	2018
30029919	Proteomic analysis reveals that sulfamethoxazole induces oxidative stress in M. tuberculosis.	Tuberculosis	2018
29916082	Characterization of Plant Glycoproteins: Analysis of Plant Glycopeptide Mass Spectrometry Data with plantGlycoMS, a Package in the R Statistical Computing Environment.	Methods Mol Biol	2018
29623005	Challenges and Opportunities for Biological Mass Spectrometry Core Facilities in the Developing World.		2018
27498275	In-depth analysis of protein inference algorithms using multiple search engines and well-defined metrics.	J Proteomics	2017
28820946	Proteogenomic Investigation of Strain Variation in Clinical Mycobacterium tuberculosis Isolates.	J Proteome Res	2017
28849660	Proteomics Standards Initiative: Fifteen Years of Progress and Future Work.	J Proteome Res	2017
28318237	The Human Proteome Organization-Proteomics Standards Initiative Quality Control Working Group: Making Quality Control More Accessible for Biological Mass Spectrometry.	Anal Chem	2017
29050771	Host blood RNA signatures predict the outcome of tuberculosis treatment.	Tuberculosis (Edinb)	2017
29124938	Quality Assessments of Long-Term Quantitative Proteomic Analysis of Breast Cancer Xenograft Tissues.	J Proteome Res	2017
26549202	Chronic intermittent alcohol disrupts the GluN2B-associated proteome and specifically regulates group I mGlu receptor-dependent long-term depression.	Addiction Biology	2017
27493588	Recognizing millions of consistently unidentified spectra across hundreds of shotgun proteomics datasets.	Nat Methods	2016
27151270	Site-Specific N-Glycosylation Characterization of Windmill Palm Tree Peroxidase Using Novel Tools for Analysis of Plant Glycopeptide Mass Spectrometry Data.	J Proteome Res	2016
27186799	Greazy: Open-Source Software for Automated Phospholipid Tandem Mass Spectrometry Identification.	Anal Chem	2016
27372738	Integrated Proteogenomic Characterization of Human High-Grade Serous Ovarian Cancer.	Cell	2016
26657539	proBAMsuite, a Bioinformatics Framework for Genome-Based Representation and Analysis of Proteomics Data.	Mol Cell Proteomics	2016
26653538	Reproducibility of Differential Proteomic Technologies in CPTAC Fractionated Xenografts.	J Proteome Res	2016
26593852	Comprehensive Characterization of Glycosylation and Hydroxylation of Basement Membrane Collagen IV by High-Resolution Mass Spectrometry.	Journal of Proteome Research	2016
26631509	An Analysis of the Sensitivity of Proteogenomic Mapping of Somatic Mutations and Novel Splicing Events in Cancer.	Mol Cell Proteomics	2016
26243018	Correcting systematic bias and instrument measurement drift with mzRefinery.	Bioinformatics	2015
25411686	Wavelet-based peak detection and a new charge inference procedure for MS/MS implemented in ProteoWizard's msConvert.	J Proteome Res	2015
26139413	Advanced Proteogenomic Analysis Reveals Multiple Peptide Mutations and Complex Immunoglobulin Peptides in Colon Cancer.	J Proteome Res	2015
26435129	The 2012/2013 ABRF Proteomic Research Group Study: Assessing Longitudinal Intralaboratory Variability in Routine Peptide Liquid Chromatography Tandem Mass Spectrometry Analyses.	Mol Cell Proteomics	2015
26217491	Corrigendum: Proteomic analysis of colon and rectal carcinoma using standard and customized databases.	Sci Data	2015
26122518	The SEQUEST family tree.	Journal of the American Society for Mass Spectrometry	2015
25043054	Proteogenomic characterization of human colon and rectal cancer.	Nature	2014
24494671	QC metrics from CPTAC raw LC-MS/MS data interpreted through multivariate statistics.	Analytical Chemistry	2014
24939128	Employing ProteoWizard to Convert Raw Mass Spectrometry Data.	Curr Protoc Bioinformatics	2014
25092112	A standardized framing for reporting protein identifications in mzIdentML 1.2.	Proteomics	2014
24564885	Neurovascular unit on a chip: implications for translational applications.	Stem Cell Res Ther	2013
23879310	IDPQuantify: combining precursor intensity with spectral counts for protein and peptide quantification.	J Proteome Res	2013
24047897	Identification of proteins at active, stalled, and collapsed replication forks using isolation of proteins on nascent DNA (iPOND) coupled with mass spectrometry.	Journal of Biological Chemistry	2013
23625403	Informatics of protein and posttranslational modification detection via shotgun proteomics.	Methods Mol Biol	2013
23499924	Basophile: accurate fragment charge state prediction improves peptide identification rates.	Genomics Proteomics Bioinformatics	2013