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Author Details

Eric Haugen
Altius Institute for Biomedical Sciences
2003
42
33
Nathan Sheffield (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
34996498Integrative analysis of 3604 GWAS reveals multiple novel cell type-specific regulatory associations.Genome Biol2022
35412591Associations Between Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Variants and Risk of Coronavirus Disease 2019 (COVID-19) Hospitalization Among Confirmed Cases in Washington State: A Retrospective Cohort Study.Clin Infect Dis2022
35150617Differences in nanoscale organization of regulatory active and inactive human chromatin.Biophys J2022
32728217Index and biological spectrum of human DNase I hypersensitive sites.Nature2020
32728250Global reference mapping of human transcription factor footprints.Nature2020
30827930Integrated epigenomic profiling reveals endogenous retrovirus reactivation in renal cell carcinoma.EBioMedicine2019
26711113Erratum: Large-scale identification of sequence variants influencing human transcription factor occupancy in vivo.Nat Genet2016
2765946652 Genetic Loci Influencing Myocardial Mass.J Am Coll Cardiol2016
26912503Rare Variants of the Serotonin Transporter Are Associated With Psychiatric Comorbidity in Irritable Bowel Syndrome.Biol Res Nurs2016
26502339Large-scale identification of sequence variants influencing human transcription factor occupancy in vivo.Nat Genet2015
24336318Reduced local mutation density in regulatory DNA of cancer genomes is linked to DNA repair.Nat Biotechnol2014
25411453Mouse regulatory DNA landscapes reveal global principles of cis-regulatory evolution.Science2014
25409824A comparative encyclopedia of DNA elements in the mouse genome.Nature2014
25409825Conservation of trans-acting circuitry during mammalian regulatory evolution.Nature2014
25220462Mapping and dynamics of regulatory DNA and transcription factor networks in A. thaliana.Cell Rep2014
24947819Epigenetic regulation by chromatin activation mark H3K4me3 in primate progenitor cells within adult neurogenic niche.Sci Rep2014
24594777Transcriptome profiling of human hippocampus dentate gyrus granule cells in mental illness.Transl Psychiatry2014
23459479Polymyxin resistance of Pseudomonas aeruginosa phoQ mutants is dependent on additional two-component regulatory systems.Antimicrob Agents Chemother2013
24337295Exonic transcription factor binding directs codon choice and affects protein evolution.Science2013
23953118Developmental fate and cellular maturity encoded in human regulatory DNA landscapes.Cell2013
22576172BEDOPS: high-performance genomic feature operations.Bioinformatics2012
23209222Genome sequence of Francisella tularensis subspecies holarctica strain FSC200, isolated from a child with tularemia.J Bacteriol2012
22955828Systematic localization of common disease-associated variation in regulatory DNA.Science2012
22955618An expansive human regulatory lexicon encoded in transcription factor footprints.Nature2012
22955617The accessible chromatin landscape of the human genome.Nature2012
22615773Evolution of Burkholderia pseudomallei in recurrent melioidosis.PLoS One2012
21854988The human mitochondrial transcriptome.Cell2011
19564389Analysis of the genome of the Escherichia coli O157:H7 2006 spinach-associated outbreak isolate indicates candidate genes that may enhance virulence.Infect Immun2009
19440302Methylobacterium genome sequences: a reference blueprint to investigate microbial metabolism of C1 compounds from natural and industrial sources.PLoS One2009
18157130Closing gaps in the human genome with fosmid resources generated from multiple individuals.Nat Genet2008
18451855Mapping and sequencing of structural variation from eight human genomes.Nature2008
18445516Large-insert genome analysis technology detects structural variation in Pseudomonas aeruginosa clinical strains from cystic fibrosis patients.Genomics2008
17550600Comparison of Francisella tularensis genomes reveals evolutionary events associated with the emergence of human pathogenic strains.Genome Biol2007
16641997The DNA sequence, annotation and analysis of human chromosome 3.Nature2006
17000723Potential source of Francisella tularensis live vaccine strain attenuation determined by genome comparison.Infect Immun2006
16710414The DNA sequence and biological annotation of human chromosome 1.Nature2006
16751668Scan of human genome reveals no new Loci under ancient balancing selection.Genetics2006
15895083Fine-scale structural variation of the human genome.Nat Genet2005
16249066Targeted, haplotype-resolved resequencing of long segments of the human genome.Genomics2005
16140993Ancient haplotypes of the HLA Class II region.Genome Res2005
12853948The DNA sequence of human chromosome 7.Nature2003
14617778Comprehensive transposon mutant library of Pseudomonas aeruginosa.Proc Natl Acad Sci U S A2003
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Collaborators

Rajinder Kaul
Altius Institute for Biomedical Sciences
Co-authored papers 29
John A Stamatoyannopoulos
Altius Institute for Biomedical Sciences
Co-authored papers 21
Richard Sandstrom
Altius Institute for Biomedical Sciences
Co-authored papers 15
Maynard V Olson
University of Washington
Co-authored papers 14
Alex P Reynolds
Altius Institute for Biomedical Sciences
Co-authored papers 13
Audra K Johnson
Altius Institute for Biomedical Sciences
Co-authored papers 11
Jeff Vierstra
Altius Institute for Biomedical Sciences
Co-authored papers 11
Eric Rynes
Altius Institute for Biomedical Sciences
Co-authored papers 10
Shane Neph
Altius Institute for Biomedical Sciences
Co-authored papers 10
Morgan Diegel
Altius Institute for Biomedical Sciences
Co-authored papers 10
Robert E Thurman
University of Washington
Co-authored papers 10
Jean Chang
Center for Innate Immunity and Immune Disease, University of Washington
Co-authored papers 10
Daniel Bates
Altius Institute for Biomedical Sciences
Co-authored papers 8
Fidencio Neri
Altius Institute for Biomedical Sciences
Co-authored papers 8
Kristen Lee
Altius Institute for Biomedical Sciences
Co-authored papers 8
Douglas Dunn
Altius Institute for Biomedical Sciences
Co-authored papers 8
Richard Humbert
University of Washington
Co-authored papers 7
Peter J Sabo
University of Washington
Co-authored papers 7
Matthew T Maurano
Institute for Systems Genetics, NYU School of Medicine
Co-authored papers 7
Evan E Eichler
University of Washington
Co-authored papers 6
Anthony Shafer
University of Washington
Co-authored papers 6
R S Hansen
University of Washington
Co-authored papers 6
Andrew B Stergachis
University of Washington School of Medicine
Co-authored papers 6
Erika Giste
University of Washington
Co-authored papers 6
Theresa K Canfield
University of Washington
Co-authored papers 6
Benjamin Vernot
Max Planck Institute for Evolutionary Anthropology
Co-authored papers 5
Shinny Vong
University of Washington
Co-authored papers 5
Molly Weaver
University of Kentucky
Co-authored papers 4
Joshua M Akey
Princeton University
Co-authored papers 4
Tanya Kutyavin
Altius Institute for Biomedical Sciences
Co-authored papers 4
Release 1.2