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| 36799723 | The Glycan Structure Dictionary-a dictionary describing commonly used glycan structure terms. | | 2023 |
| 36711080 | Worldwide Glycoscience Informatics Infrastructure: The GlySpace Alliance. | | 2023 |
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| 35835332 | Cardiomyocyte-specific regression of nitrosative stress-mediated S-Nitrosylation of IKKγ alleviates pathological cardiac hypertrophy. | Cellular Signalling | 2022 |
| 35925813 | Modeling and integration of N-glycan biomarkers in a comprehensive biomarker data model. | Glycobiology | 2022 |
| 35598439 | Higher levels of Bifidobacteria and tumor necrosis factor in children with drug-resistant epilepsy are associated with anti-seizure response to the ketogenic diet. | EBioMedicine | 2022 |
| 37841494 | Whole Genome Variant Dataset for Enriching Studies across 18 Different Cancers. | | 2022 |
| 32940334 | Scanning window analysis of non-coding regions within normal-tumor whole-genome sequence samples. | Briefings in Bioinformatics | 2021 |
| 34015823 | COVID-19 biomarkers and their overlap with comorbidities in a disease biomarker data model. | Brief Bioinform | 2021 |
| 33784373 | Bioinformatics tools developed to support BioCompute Objects. | Database (Oxford) | 2021 |
| 34314492 | Enhancing the interoperability of glycan data flow between ChEBI, PubChem and GlyGen. | Glycobiology | 2021 |
| 34082069 | Mice with dysfunctional TGF-β signaling develop altered intestinal microbiome and colorectal cancer resistant to 5FU. | | 2021 |
| 33055255 | Streamlined Subpopulation, Subtype, and Recombination Analysis of HIV-1 Half-Genome Sequences Generated by High-Throughput Sequencing. | mSphere | 2020 |
| 32324859 | GlyGen data model and processing workflow. | Bioinformatics | 2020 |
| 31585122 | Mutated CEACAMs Disrupt Transforming Growth Factor Beta Signaling and Alter the Intestinal Microbiome to Promote Colorectal Carcinogenesis. | Gastroenterology | 2020 |
| 31573039 | The GlySpace Alliance: toward a collaborative global glycoinformatics community. | Glycobiology | 2020 |
| 31616925 | GlyGen: Computational and Informatics Resources for Glycoscience. | Glycobiology | 2020 |
| 33814114 | Bioinformatics and machine learning in gastrointestinal microbiome research and clinical application. | Progress in Molecular Biology and Translational Science | 2020 |
| 30934003 | Investigation of somatic single nucleotide variations in human endogenous retrovirus elements and their potential association with cancer. | PLoS ONE | 2019 |
| 30378067 | A Primer for Access to Repositories of Cancer-Related Genomic Big Data. | Methods in Molecular Biology | 2019 |
| 30653336 | miCloud: A Plug-n-Play, Extensible, On-Premises Bioinformatics Cloud for Seamless Execution of Complex Next-Generation Sequencing Data Analysis Pipelines. | Journal of Computational Biology | 2019 |
| 31509535 | Baseline human gut microbiota profile in healthy people and standard reporting template. | PLoS One | 2019 |
| 29531238 | Loss and gain of N-linked glycosylation sequons due to single-nucleotide variation in cancer. | Scientific Reports | 2018 |
| 28918914 | Analysis of Genomes and Transcriptomes of Hepatocellular Carcinomas Identifies Mutations and Gene Expression Changes in the Transforming Growth Factor-β Pathway. | Gastroenterology | 2018 |
| 30596645 | Enabling precision medicine via standard communication of HTS provenance, analysis, and results. | PLoS Biol | 2018 |
| 30384176 | Identification of key differentially expressed MicroRNAs in cancer patients through pan-cancer analysis. | Comput Biol Med | 2018 |
| 30053270 | BioMuta and BioXpress: mutation and expression knowledgebases for cancer biomarker discovery. | Nucleic Acids Research | 2018 |
| 29860481 | DEXTER: Disease-Expression Relation Extraction from Text. | Database (Oxford) | 2018 |
| 28113865 | Pubcast and Genecast: Browsing and Exploring Publications and Associated Curated Content in Biology Through Mobile Devices. | IEEE/ACM Transactions on Computational Biology and Bioinformatics | 2017 |
| 28977510 | Separation and assembly of deep sequencing data into discrete sub-population genomes. | Nucleic Acids Research | 2017 |
| 26810135 | Impact of germline and somatic missense variations on drug binding sites. | Pharmacogenomics J | 2017 |
| 28150238 | Impact of Nonsynonymous Single-Nucleotide Variations on Post-Translational Modification Sites in Human Proteins. | Methods in Molecular Biology | 2017 |
| 27974626 | Biocompute Objects-A Step towards Evaluation and Validation of Biomedical Scientific Computations. | PDA J Pharm Sci Technol | 2017 |
| 28176830 | Distribution bias analysis of germline and somatic single-nucleotide variations that impact protein functional site and neighboring amino acids. | Scientific Reports | 2017 |
| 27073839 | DiMeX: A Text Mining System for Mutation-Disease Association Extraction. | PLoS ONE | 2016 |
| 27153712 | Computational clustering for viral reference proteomes. | Bioinformatics | 2016 |
| 26989153 | High-performance integrated virtual environment (HIVE): a robust infrastructure for next-generation sequence data analysis. | Database : the journal of biological databases and curation | 2016 |
| 25245635 | Structure-function analysis of hepatitis C virus envelope glycoproteins E1 and E2. | Journal of Biomolecular Structure and Dynamics | 2015 |
| 25841438 | Generating a focused view of disease ontology cancer terms for pan-cancer data integration and analysis. | Database (Oxford) | 2015 |
| 25538240 | Germ line variants of human N-methylpurine DNA glycosylase show impaired DNA repair activity and facilitate 1,N6-ethenoadenine-induced mutations. | J Biol Chem | 2015 |
| 25819073 | BioXpress: an integrated RNA-seq-derived gene expression database for pan-cancer analysis. | Database : the journal of biological databases and curation | 2015 |
| 24918764 | HIVE-hexagon: high-performance, parallelized sequence alignment for next-generation sequencing data analysis. | PLoS ONE | 2014 |
| 25336203 | Census-based rapid and accurate metagenome taxonomic profiling. | BMC Genomics | 2014 |
| 25271953 | High-Performance Integrated Virtual Environment (HIVE) Tools and Applications for Big Data Analysis. | Genes | 2014 |
| 24467687 | Non-synonymous variations in cancer and their effects on the human proteome: workflow for NGS data biocuration and proteome-wide analysis of TCGA data. | BMC Bioinformatics | 2014 |
| 25232094 | Human germline and pan-cancer variomes and their distinct functional profiles. | Nucleic Acids Research | 2014 |
| 24667251 | A framework for organizing cancer-related variations from existing databases, publications and NGS data using a High-performance Integrated Virtual Environment (HIVE). | Database : the journal of biological databases and curation | 2014 |
| 24894379 | A framework for application of metabolic modeling in yeast to predict the effects of nsSNV in human orthologs. | Biol Direct | 2014 |
| 24705329 | Single-nucleotide variations in cardiac arrhythmias: prospects for genomics and proteomics based biomarker discovery and diagnostics. | Genes | 2014 |
| 24930720 | Whole genome single-nucleotide variation profile-based phylogenetic tree building methods for analysis of viral, bacterial and human genomes. | Genomics | 2014 |