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Author Details

Maria J Martin
European Bioinformatics Institute (EMBL-EBI)
1994
94
39
Gloria M Sheynkman (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36866529The Gene Ontology knowledgebase in 2023.Genetics2023
37647632The effects of pathogenic and likely pathogenic variants for inherited hemostasis disorders in 140â¿¿214 UK Biobank participants.Blood2023
36912607Searching and Navigating UniProt Databases.Curr Protoc2023
37387156Transfer learning for drug-target interaction prediction.Bioinformatics2023
36866529The Gene Ontology knowledgebase in 2023.Genetics2023
37359723Nightingale: web components for protein feature visualization.Bioinform Adv2023
37647632The effects of pathogenic and likely pathogenic variants for inherited hemostasis disorders in 140â¿¿214 UK Biobank participants.Blood2023
37387156Transfer learning for drug-target interaction prediction.Bioinformatics2023
37359723Nightingale: web components for protein feature visualization.Bioinform Adv2023
36912607Searching and Navigating UniProt Databases.Curr Protoc2023
34761267The IntAct database: efficient access to fine-grained molecular interaction data.Nucleic Acids Res2022
35961013A roadmap for the functional annotation of protein families: a community perspective.Database (Oxford)2022
35831657Standardized annotation of translated open reading frames.Nat Biotechnol2022
35640880Method for Independent Estimation of the False Localization Rate for Phosphoproteomics.J Proteome Res2022
35552456The Quest for Orthologs orthology benchmark service in 2022.Nucleic Acids Res2022
35366804PyToxo: a Python tool for calculating penetrance tables of high-order epistasis models.BMC Bioinformatics2022
35801913SLPred: a multi-view subcellular localization prediction tool for multi-location human proteins.Bioinformatics2022
35929781Hierarchical deep learning for predicting GO annotations by integrating protein knowledge.Bioinformatics2022
34437766The Enzyme Portal: an integrative tool for enzyme information and analysis.FEBS J2022
34761267The IntAct database: efficient access to fine-grained molecular interaction data.Nucleic Acids Res2022
35801913SLPred: a multi-view subcellular localization prediction tool for multi-location human proteins.Bioinformatics2022
35831657Standardized annotation of translated open reading frames.Nat Biotechnol2022
35640880Method for Independent Estimation of the False Localization Rate for Phosphoproteomics.J Proteome Res2022
35366804PyToxo: a Python tool for calculating penetrance tables of high-order epistasis models.BMC Bioinformatics2022
35552456The Quest for Orthologs orthology benchmark service in 2022.Nucleic Acids Res2022
35929781Hierarchical deep learning for predicting GO annotations by integrating protein knowledge.Bioinformatics2022
35961013A roadmap for the functional annotation of protein families: a community perspective.Database (Oxford)2022
34437766The Enzyme Portal: an integrative tool for enzyme information and analysis.FEBS J2022
33147627Computational strategies to combat COVID-19: useful tools to accelerate SARS-CoV-2 and coronavirus research.Brief Bioinform2021
34181736CROssBAR: comprehensive resource of biomedical relations with knowledge graph representations.Nucleic Acids Res2021
33821964UniRule: a unified rule resource for automatic annotation in the UniProt Knowledgebase.Bioinformatics2021
33147627Computational strategies to combat COVID-19: useful tools to accelerate SARS-CoV-2 and coronavirus research.Brief Bioinform2021
33067636MDeePred: novel multi-channel protein featurization for deep learning-based binding affinity prediction in drug discovery.Bioinformatics2021
34673265A GO catalogue of human DNA-binding transcription factors.Biochim Biophys Acta Gene Regul Mech2021
34843456Protein domain-based prediction of drug/compound-target interactions and experimental validation on LIM kinases.PLoS Comput Biol2021
33821964UniRule: a unified rule resource for automatic annotation in the UniProt Knowledgebase.Bioinformatics2021
34673265A GO catalogue of human DNA-binding transcription factors.Biochim Biophys Acta Gene Regul Mech2021
34843456Protein domain-based prediction of drug/compound-target interactions and experimental validation on LIM kinases.PLoS Comput Biol2021
34181736CROssBAR: comprehensive resource of biomedical relations with knowledge graph representations.Nucleic Acids Res2021
33067636MDeePred: novel multi-channel protein featurization for deep learning-based binding affinity prediction in drug discovery.Bioinformatics2021
32374845The Quest for Orthologs benchmark service and consensus calls in 2020.Nucleic Acids Res2020
32374845The Quest for Orthologs benchmark service and consensus calls in 2020.Nucleic Acids Res2020
32417785Gene Ontology Curation of Neuroinflammation Biology Improves the Interpretation of Alzheimer's Disease Gene Expression Data.J Alzheimers Dis2020
32884053Effect of sequence padding on the performance of deep learning models in archaeal protein functional prediction.Sci Rep2020
32884053Effect of sequence padding on the performance of deep learning models in archaeal protein functional prediction.Sci Rep2020
32417785Gene Ontology Curation of Neuroinflammation Biology Improves the Interpretation of Alzheimer's Disease Gene Expression Data.J Alzheimers Dis2020
30445541SIFTS: updated Structure Integration with Function, Taxonomy and Sequences resource allows 40-fold increase in coverage of structure-based annotations for proteins.Nucleic Acids Res2019
31744546The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens.Genome Biol2019
30445541SIFTS: updated Structure Integration with Function, Taxonomy and Sequences resource allows 40-fold increase in coverage of structure-based annotations for proteins.Nucleic Acids Res2019
30084866Recent applications of deep learning and machine intelligence on in silico drug discovery: methods, tools and databases.Brief Bioinform2019
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Rolf Apweiler
European Bioinformatics Institute (EMBL-EBI)
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Tunca Do??an
Hacettepe University
Co-authored papers 12
Michele Magrane
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Middle East Technical University
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Paul D Thomas
University of Southern California
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Sandra Orchard
EMBL's European Bioinformatics Institute (EMBL-EBI)
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Tony Sawford
European Bioinformatics Institute
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Christophe Dessimoz
University of Lausanne
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Nicole Redaschi
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Amos Bairoch
University of Geneva
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Brigitte Boeckmann
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Sangya Pundir
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Darren A Natale
Georgetown University Medical Center
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Elisabeth Gasteiger
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Helen Parkinson
European Bioinformatics Institute
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Catherine Rivoire
carnegie mellon university
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Adrian M Altenhoff
ETH Zurich, Universitatstr. 6
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Erik L L Sonnhammer
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Toni Gabald??n
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Release 1.2