Skip to Main Content

Author Details

Daniel Blankenberg
Genomic Medicine Institute, Lerner Research Institute, Cleveland Clinic
2005
44
21
Trey Ideker (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36440918Evaluating homophily in networks via HONTO (HOmophily Network TOol): a case study of chromosomal interactions in human PPI networks.Bioinformatics2023
36440918Evaluating homophily in networks via HONTO (HOmophily Network TOol): a case study of chromosomal interactions in human PPI networks.Bioinformatics2023
37569616Contemporary Antiretroviral Therapy Dysregulates Iron Transport and Augments Mitochondrial Dysfunction in HIV-Infected Human Microglia and Neural-Lineage Cells.Int J Mol Sci2023
37149987Phosphorylation-mediated regulation of the Bacillus anthracis phosphoglycerate mutase by the Ser/Thr protein kinase PrkC.Biochem Biophys Res Commun2023
37066251Genomics to Notebook (g2nb): extending the electronic notebook to address the challenges of bioinformatics analysis.bioRxiv2023
36622853Galaxy Training: A powerful framework for teaching!PLoS Comput Biol2023
37104749CNV-ClinViewer: enhancing the clinical interpretation of large copy-number variants online.Bioinformatics2023
37569616Contemporary Antiretroviral Therapy Dysregulates Iron Transport and Augments Mitochondrial Dysfunction in HIV-Infected Human Microglia and Neural-Lineage Cells.Int J Mol Sci2023
37149987Phosphorylation-mediated regulation of the Bacillus anthracis phosphoglycerate mutase by the Ser/Thr protein kinase PrkC.Biochem Biophys Res Commun2023
37104749CNV-ClinViewer: enhancing the clinical interpretation of large copy-number variants online.Bioinformatics2023
37066251Genomics to Notebook (g2nb): extending the electronic notebook to address the challenges of bioinformatics analysis.bioRxiv2023
36622853Galaxy Training: A powerful framework for teaching!PLoS Comput Biol2023
36170207Delivery of ceramide phosphoethanolamine lipids to the cleavage furrow through the endocytic pathway is essential for male meiotic cytokinesis.PLoS Biol2022
36170207Delivery of ceramide phosphoethanolamine lipids to the cleavage furrow through the endocytic pathway is essential for male meiotic cytokinesis.PLoS Biol2022
35760813GenomicSuperSignature facilitates interpretation of RNA-seq experiments through robust, efficient comparison to public databases.Nat Commun2022
35643441PDAUG: a Galaxy based toolset for peptide library analysis, visualization, and machine learning modeling.BMC Bioinformatics2022
35504396Evaluation of vertical and horizontal distribution of particulate matter near an urban roadway using an unmanned aerial vehicle.Sci Total Environ2022
36267124Analysis of nested alternate open reading frames and their encoded proteins.NAR Genom Bioinform2022
35669346Expanding the Galaxy's reference data.Bioinform Adv2022
35402240Re-Expression of ERα and AR in Receptor Negative Endocrine Cancers <i>via</i> GSK3 Inhibition.Front Oncol2022
35643441PDAUG: a Galaxy based toolset for peptide library analysis, visualization, and machine learning modeling.BMC Bioinformatics2022
35504396Evaluation of vertical and horizontal distribution of particulate matter near an urban roadway using an unmanned aerial vehicle.Sci Total Environ2022
35402240Re-Expression of ERα and AR in Receptor Negative Endocrine Cancers <i>via</i> GSK3 Inhibition.Front Oncol2022
35669346Expanding the Galaxy's reference data.Bioinform Adv2022
35760813GenomicSuperSignature facilitates interpretation of RNA-seq experiments through robust, efficient comparison to public databases.Nat Commun2022
36267124Analysis of nested alternate open reading frames and their encoded proteins.NAR Genom Bioinform2022
33583104Using Galaxy to Perform Large-Scale Interactive Data Analyses-An Update.Curr Protoc2021
33583104Using Galaxy to Perform Large-Scale Interactive Data Analyses-An Update.Curr Protoc2021
32479607The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2020 update.Nucleic Acids Res2020
31959996Galaxy External Display Applications: closing a dataflow interoperability loop.Nat Methods2020
32479607The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2020 update.Nucleic Acids Res2020
32585001Corrigendum: The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2020 update.Nucleic Acids Res2020
33079170A single-cell RNA-sequencing training and analysis suite using the Galaxy framework.Gigascience2020
32559231A crowdsourced set of curated structural variants for the human genome.PLoS Comput Biol2020
31959996Galaxy External Display Applications: closing a dataflow interoperability loop.Nat Methods2020
33079170A single-cell RNA-sequencing training and analysis suite using the Galaxy framework.Gigascience2020
32585001Corrigendum: The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2020 update.Nucleic Acids Res2020
32559231A crowdsourced set of curated structural variants for the human genome.PLoS Comput Biol2020
31121028Software engineering for scientific big data analysis.Gigascience2019
31751474Sptlc1 is essential for myeloid differentiation and hematopoietic homeostasis.Blood Adv2019
31121028Software engineering for scientific big data analysis.Gigascience2019
31751474Sptlc1 is essential for myeloid differentiation and hematopoietic homeostasis.Blood Adv2019
29790989The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update.Nucleic Acids Res2018
30232389Child Weight Gain Trajectories Linked To Oral Microbiota Composition.Sci Rep2018
29688462Biology Needs Evolutionary Software Tools: Let's Build Them Right.Mol Biol Evol2018
29790989The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update.Nucleic Acids Res2018
30232389Child Weight Gain Trajectories Linked To Oral Microbiota Composition.Sci Rep2018
29688462Biology Needs Evolutionary Software Tools: Let's Build Them Right.Mol Biol Evol2018
26780094Integrative genomic analysis by interoperation of bioinformatics tools in GenomeSpace.Nat Methods2016
27137889The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update.Nucleic Acids Res2016
  • 1 - 50 of 88

Recommended Authors

University of California berkeley
Career Start Year 2016
Number of shared co-authors 1
University of Melbourne
Career Start Year 2013
Number of shared co-authors 2
School of Pharmacy, University of Southern California
Career Start Year 2011
Number of shared co-authors 3
University of Utah
Career Start Year 2010
Number of shared co-authors 1
Spanish National Bioinformatics Institute (INB/ELIXIR-ES)
Career Start Year 2009
Number of shared co-authors 4
Institut Francais de Bioinformatique
Career Start Year 2009
Number of shared co-authors 4
Center for Cancer Research, Massachusetts General Hospital, Harvard Medical School
Career Start Year 2008
Number of shared co-authors 3
European Bioinformatics Institute
Career Start Year 2008
Number of shared co-authors 0
Stockholm University
Career Start Year 2008
Number of shared co-authors 3
Earlham Institute
Career Start Year 2007
Number of shared co-authors 1
University of Colorado Anschutz Medical Campus
Career Start Year 2007
Number of shared co-authors 9
European Bioinformatics Institute
Career Start Year 2005
Number of shared co-authors 4
UC Santa Cruz Genomics Institute, University of California
Career Start Year 2005
Number of shared co-authors 30
European Bioinformatics Institute
Career Start Year 2004
Number of shared co-authors 6
Institute for Genome Sciences, University of Maryland School of Medicine
Career Start Year 2004
Number of shared co-authors 6
Baylor College of Medicine
Career Start Year 2004
Number of shared co-authors 11
Harvard T.H. Chan School of Public Health
Career Start Year 2003
Number of shared co-authors 8
Personal Genome Diagnostics Inc.
Career Start Year 2001
Number of shared co-authors 1
Wageningen University & Research
Career Start Year 2001
Number of shared co-authors 3
University of Cambridge
Career Start Year 2000
Number of shared co-authors 5
University of Toronto
Career Start Year 2000
Number of shared co-authors 10
University of California davis
Career Start Year 1999
Number of shared co-authors 3
Institute for Genome Sciences, University of Maryland School of Medicine
Career Start Year 1998
Number of shared co-authors 5
Scripps Institution of Oceanography, University of California San Diego
Career Start Year 1994
Number of shared co-authors 5
Stanford University School of Medicine
Career Start Year 1992
Number of shared co-authors 8
Center for Computational Biology, Johns Hopkins University
Career Start Year 1992
Number of shared co-authors 14
European Bioinformatics Institute
Career Start Year 1992
Number of shared co-authors 34
Yale University
Career Start Year 1991
Number of shared co-authors 31
Lawrence Berkely National Laboratory, Massachusetts Institute of Technology, Princeton University
Career Start Year 1990
Number of shared co-authors 10
Ontario Institute for Cancer Research, University Avenue
Career Start Year 1986
Number of shared co-authors 13

Collaborators

The Pennsylvania State University, University Park
Co-authored papers 23
Johns Hopkins University
Co-authored papers 20
Johns Hopkins University
Co-authored papers 8
Johns Hopkins University
Co-authored papers 6
Co-authored papers 6
Oregon Health & Science University
Co-authored papers 5
Clinical Bioinformatics Group, Erasmus Medical Center
Co-authored papers 4
Institut Curie, PSL Research University, CNRS UMR 5, INSERM U934
Co-authored papers 4
Co-authored papers 4
Co-authored papers 3
Friedrich Miescher Institute for Biomedical Research
Co-authored papers 3
The Pennsylvania State University, University Park
Co-authored papers 3
Co-authored papers 3
Broad Institute of MIT and Harvard
Co-authored papers 2
Co-authored papers 2
Co-authored papers 2
Co-authored papers 2
Co-authored papers 2
Peter MacCallum Cancer Centre
Co-authored papers 2
University of California San Diego
Co-authored papers 2
The Broad Institute of MIT and Harvard
Co-authored papers 1
Whitehead Institute for Biomedical Research, Massachusetts Institute of Technology
Co-authored papers 1
Chongqing Aier Eye Hospital
Co-authored papers 1
Rice University
Co-authored papers 1
The University of Melbourne
Co-authored papers 1
University of Minnesota
Co-authored papers 1
Co-authored papers 1
Co-authored papers 1
Genomics Institute, University of California Santa Cruz
Co-authored papers 1
Co-authored papers 1