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Author Details

Dan Graur
University of Houston
1982
113
46
PMIDPaper TitleJournal TitlePublished Year
35743002Slaying (Yet Again) the Brain-Eating Zombie Called the "Isochore Theory": A Segmentation Algorithm Used to "Confirm" the Existence of Isochores Creates "Isochores" Where None Exist.Int J Mol Sci2022
33916341On the Unfounded Enthusiasm for Soft Selective Sweeps III: The Supervised Machine Learning Algorithm That Isn't.Genes (Basel)2021
30813627<i>ProtParCon</i>: A Framework for Processing Molecular Data and Identifying Parallel and Convergent Amino Acid Replacements.Genes (Basel)2019
34691869Mother tongue? Muttersprache? Lingua mater? Not so fast!Natl Sci Rev2019
31697388Corrigendum to: "An Upper Limit on the Functional Fraction of the Human Genome".Genome Biol Evol2019
29955898Correlated Selection on Amino Acid Deletion and Replacement in Mammalian Protein Sequences.J Mol Evol2018
28854598An Upper Limit on the Functional Fraction of the Human Genome.Genome Biol Evol2017
26563252Are Synonymous Sites in Primates and Rodents Functionally Constrained?J Mol Evol2016
25315661Reply to Mendez et al: the 'extremely ancient' chromosome that still isn't.Eur J Hum Genet2015
25635041An evolutionary classification of genomic function.Genome Biol Evol2015
24448544The 'extremely ancient' chromosome that isn't: a forensic bioinformatic investigation of Albert Perry's X-degenerate portion of the Y chromosome.Eur J Hum Genet2014
25326207The parasite Trichomonas vaginalis expresses thousands of pseudogenes and long non-coding RNAs independently from functional neighbouring genes.BMC Genomics2014
25375262A comparative study and a phylogenetic exploration of the compositional architectures of mammalian nuclear genomes.PLoS Comput Biol2014
24451533Peer review: Payback time for referee refusal.Nature2014
24479613Finding the missing honey bee genes: lessons learned from a genome upgrade.BMC Genomics2014
23431001On the immortality of television sets: "function" in the human genome according to the evolution-free gospel of ENCODE.Genome Biol Evol2013
25937951IsoPlotter(+): A Tool for Studying the Compositional Architecture of Genomes.ISRN Bioinform2013
23636946Social insect genomes exhibit dramatic evolution in gene composition and regulation while preserving regulatory features linked to sociality.Genome Res2013
23651527Detecting negative selection on recurrent mutations using gene genealogy.BMC Genet2013
21282631Draft genome of the globally widespread and invasive Argentine ant (Linepithema humile).Proc Natl Acad Sci U S A2011
22187135Is there a twelfth protein-coding gene in the genome of influenza A? A selection-based approach to the detection of overlapping genes in closely related sequences.J Mol Evol2011
21303550The multiple personalities of Watson and Crick strands.Biol Direct2011
21347285The genome sequence of the leaf-cutter ant Atta cephalotes reveals insights into its obligate symbiotic lifestyle.PLoS Genet2011
21285032Neutral evolution of robustness in Drosophila microRNA precursors.Mol Biol Evol2011
21282651Draft genome of the red harvester ant Pogonomyrmex barbatus.Proc Natl Acad Sci U S A2011
20018981Comparative testing of DNA segmentation algorithms using benchmark simulations.Mol Biol Evol2010
20820768Detection of functional overlapping genes: simulation and case studies.J Mol Evol2010
20497997GUIDANCE: a web server for assessing alignment confidence scores.Nucleic Acids Res2010
20571085Identifying compositionally homogeneous and nonhomogeneous domains within the human genome using a novel segmentation algorithm.Nucleic Acids Res2010
20158921'Genome order index' should not be used for defining compositional constraints in nucleotide sequences--a case study of the Z-curve.Biol Direct2010
20207713An alignment confidence score capturing robustness to guide tree uncertainty.Mol Biol Evol2010
19952117Revisiting the operational RNA code for amino acids: Ensemble attributes and their implications.RNA2010
20075255Functional and evolutionary insights from the genomes of three parasitoid Nasonia species.Science2010
18614299Characterization of pairwise and multiple sequence alignment errors.Gene2009
20333182Estimates of positive Darwinian selection are inflated by errors in sequencing, annotation, and alignment.Genome Biol Evol2009
19761605A potentially novel overlapping gene in the genomes of Israeli acute paralysis virus and its relatives.Virol J2009
19390049The genome sequence of taurine cattle: a window to ruminant biology and evolution.Science2009
19443854Can GC content at third-codon positions be used as a proxy for isochore composition?Mol Biol Evol2009
18362917The genome of the model beetle and pest Tribolium castaneum.Nature2008
19098983A method for the simultaneous estimation of selection intensities in overlapping genes.PLoS One2008
18717987Same-strand overlapping genes in bacteria: compositional determinants of phase bias.Biol Direct2008
18243804'Genome order index' should not be used for defining compositional constraints in nucleotide sequences.Comput Biol Chem2008
18229673Local reliability measures from sets of co-optimal multiple sequence alignments.Pac Symp Biocomput2008
17056643A comparative analysis of numt evolution in human and chimpanzee.Mol Biol Evol2007
18097376Public control could be a nightmare for researchers.Nature2007
17387100Heads or tails: a simple reliability check for multiple sequence alignments.Mol Biol Evol2007
16151190The "inverse relationship between evolutionary rate and age of mammalian genes" is an artifact of increased genetic distance with rate of evolution and time of divergence.Mol Biol Evol2006
17095691The genome of the sea urchin Strongylocentrotus purpuratus.Science2006
16829541A computational tool for the genomic identification of regions of unusual compositional properties and its utilization in the detection of horizontally transferred sequences.Mol Biol Evol2006
16237210The "domino theory" of gene death: gradual and mass gene extinction events in three lineages of obligate symbiotic bacterial pathogens.Mol Biol Evol2006
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Collaborators

Eran Elhaik
Lund University
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Giddy Landan
Institute of General Microbiology, Kiel University
Co-authored papers 16
Justin T Reese
Lawrence Berkeley National Laboratory
Co-authored papers 9
Christine G Elsik
University of Missouri
Co-authored papers 9
Monica C Munoz-Torres
University of Colorado Anschutz Medical Campus
Co-authored papers 6
Darren E Hagen
Oklahoma State University
Co-authored papers 6
Chris Tyler-Smith
Wellcome Sanger Institute
Co-authored papers 5
Richard A Gibbs
Baylor College of Medicine
Co-authored papers 5
Donna M Muzny
Baylor College of Medicine
Co-authored papers 5
V V Solov'ev
Softberry Inc.
Co-authored papers 5
Kim C Worley
Baylor College of Medicine
Co-authored papers 5
Alexandre Souvorov
Co-authored papers 5
Lumi Viljakainen
Ecology and Genetics Research Unit, University of Oulu
Co-authored papers 5
Christie L Kovar
Baylor College of Medicine
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Winston Hide
Harvard Medical School
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George M Weinstock
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Lynne V Nazareth
Baylor College of Medicine
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Joshua D Gibson
University of California berkeley
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Jay W Kim
University of California at Santa Cruz
Co-authored papers 4
Margaret B Morgan
Baylor College of Medicine
Co-authored papers 4
Paul A Kitts
National Center for Biotechnology Information, National Institutes of Health
Co-authored papers 4
Andrew Cree
Baylor College of Medicine
Co-authored papers 4
Lan Zhang
Baylor College of Medicine
Co-authored papers 4
Martin Helmkampf
University of Hawaii at Hilo
Co-authored papers 4
Geoffrey Okwuonu
Baylor College of Medicine
Co-authored papers 4
J??rgen Gadau
Arizona State University
Co-authored papers 4
Evgenia V Kriventseva
University of Geneva Medical School
Co-authored papers 4
Garret Suen
University of Wisconsin-Madison
Co-authored papers 4
Lora R Lewis
Baylor College of Medicine
Co-authored papers 4
Olga Ermolaeva
National Center for Biotechnology Information, National Institutes of Health
Co-authored papers 4
Release 1.2