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Author Details

Nikolai Slavov
and Barnett Institute, Northeastern University
2009
59
27
Emma Lundberg (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36864200Initial recommendations for performing, benchmarking and reporting single-cell proteomics experiments.Nat Methods2023
38076795Massively parallel sample preparation for multiplexed single-cell proteomics using nPOP.bioRxiv2023
37695820Data-Driven Optimization of DIA Mass Spectrometry by DO-MS.J Proteome Res2023
37609178An adult clock component links circadian rhythms to pancreatic β-cell maturation.bioRxiv2023
37645043Modeling and interpretation of single-cell proteogenomic data.ArXiv2023
37873449Controlling pericellular oxygen tension in cell culture reveals distinct breast cancer responses to low oxygen tensions.bioRxiv2023
35835881Increasing the throughput of sensitive proteomics by plexDIA.Nat Biotechnol2023
37387573Single-cell proteomics: quantifying post-transcriptional regulation during development with mass-spectrometry.Development2023
37012480Prioritized mass spectrometry increases the depth, sensitivity and data completeness of single-cell proteomics.Nat Methods2023
37167320Integration of a multi-omics stem cell differentiation dataset using a dynamical model.PLoS Genet2023
36778474Data-Driven Optimization of DIA Mass Spectrometry by DO-MS.bioRxiv2023
36735898Strategies for Increasing the Depth and Throughput of Protein Analysis by plexDIA.J Proteome Res2023
36899164Sampling the proteome by emerging single-molecule and mass spectrometry methods.Nat Methods2023
36866536Great Gains in Mass Spectrometry Data Interpretation.J Proteome Res2023
34808355Scaling Up Single-Cell Proteomics.Mol Cell Proteomics2022
35654359New Views of Old Proteins: Clarifying the Enigmatic Proteome.Mol Cell Proteomics2022
36571403Single-Cell Proteomics Preparation for Mass Spectrometry Analysis Using Freeze-Heat Lysis and an Isobaric Carrier.J Vis Exp2022
36527135Exploring functional protein covariation across single cells using nPOP.Genome Biol2022
36373910Want to Publish in <i>JPR</i>? This Is What You Need to Know!J Proteome Res2022
35063071Counting protein molecules for single-cell proteomics.Cell2022
35114789Beyond Protein Sequence: Protein Isomerization in Alzheimer's Disease.J Proteome Res2022
34986167Learning from natural variation across the proteomes of single cells.PLoS Biol2022
32599342Single-cell protein analysis by mass spectrometry.Curr Opin Chem Biol2021
33767394Increasing proteomics throughput.Nat Biotechnol2021
33504367Single-cell proteomic and transcriptomic analysis of macrophage heterogeneity using SCoPE2.Genome Biol2021
33692517Voices of biotech research.Nat Biotechnol2021
34736325Comprehensive Identification of Regulatory Protein Networks.J Proteome Res2021
34731634Global characterization of macrophage polarization mechanisms and identification of M2-type polarization inhibitors.Cell Rep2021
34716448Multiplexed single-cell proteomics using SCoPE2.Nat Protoc2021
34597050Driving Single Cell Proteomics Forward with Innovation.J Proteome Res2021
33988997Measuring Protein Shapes in Living Cells.J Proteome Res2021
33190502Optimizing Accuracy and Depth of Protein Quantification in Experiments Using Isobaric Carriers.J Proteome Res2021
32820594Analyzing Ribosome Remodeling in Health and Disease.Proteomics2020
32001644Unpicking the proteome in single cells.Science2020
30473427Ribosome Stoichiometry: From Form to Function.Trends Biochem Sci2019
31562479Voices in methods development.Nat Methods2019
31260443DART-ID increases single-cell proteome coverage.PLoS Comput Biol2019
30792028Approaches for Studying Ribosome Specialization.Trends Biochem Sci2019
31081635DO-MS: Data-Driven Optimization of Mass Spectrometry Methods.J Proteome Res2019
30282776Quantifying Homologous Proteins and Proteoforms.Mol Cell Proteomics2019
30343672SCoPE-MS: mass spectrometry of single mammalian cells quantifies proteome heterogeneity during cell differentiation.Genome Biol2018
29945450Transformative Opportunities for Single-Cell Proteomics.J Proteome Res2018
30072488Single cell protein analysis for systems biology.Essays Biochem2018
28481885Post-transcriptional regulation across human tissues.PLoS Comput Biol2017
28461567Kinase Activities of RIPK1 and RIPK3 Can Direct IFN-β Synthesis Induced by Lipopolysaccharide.J Immunol2017
26950297Comparative Proteomic Profiling of Divergent Phenotypes for Water Holding Capacity across the Post Mortem Ageing Period in Porcine Muscle Exudate.PLoS One2016
26799652Guidelines for the use and interpretation of assays for monitoring autophagy (3rd edition).Autophagy2016
25921091De Novo Reconstruction of Adipose Tissue Transcriptomes Reveals Long Non-coding RNA Regulators of Brown Adipocyte Development.Cell Metab2015
26565899Differential Stoichiometry among Core Ribosomal Proteins.Cell Rep2015
26559758Making the most of peer review.Elife2015
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Collaborators

Edoardo M Airoldi
Temple University
Co-authored papers 6
David Botstein
Calico Life Sciences LLC
Co-authored papers 5
Bogdan Budnik
Co-authored papers 5
David H Perlman
Co-authored papers 4
Michael J MacCoss
University of Washington
Co-authored papers 3
Garry P Nolan
Stanford University School of Medicine
Co-authored papers 2
Jennifer E Van Eyk
Smidt Heart Institute, Cedars-Sinai Medical Center
Co-authored papers 2
Emma Lundberg (CM4AI)
Stanford University
Co-authored papers 2
Madeline A Lancaster
UK Wellcome-MRC Cambridge Stem Cell Institute, University of Cambridge
Co-authored papers 2
Ian G Mills
Queen's University Belfast
Co-authored papers 1
Ileana M Cristea
Princeton University
Co-authored papers 1
Ekihiro Seki
Co-authored papers 1
Ezra E W Cohen
university of california san diego Health System
Co-authored papers 1
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Center for Genomic Medicine, Massachusetts General Hospital
Co-authored papers 1
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Institute of Molecular Systems Biology, ETH Zurich
Co-authored papers 1
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The Microsoft Research University of Trento
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The University of Texas M.D. Anderson Cancer Center
Co-authored papers 1
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Armed Forces Radiobiology Research Institute
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J. Wade Harper
Harvard Medical School
Co-authored papers 1
Evan Z Macosko
Co-authored papers 1
Jan Paul Medema
Oncode Institute
Co-authored papers 1
David M Sabatini
Whitehead Institute for Biomedical Research and Massachusetts Institute of Technology
Co-authored papers 1
Karin D Rodland
Oregon Health and Science University
Co-authored papers 1
Arianna L Kim
Co-authored papers 1
Carlos L??pez-Ot??n
Instituto Universitario de Oncologia, Universidad de Oviedo
Co-authored papers 1
Stefan W Hell
Max Planck Institute for Biophysical Chemistry
Co-authored papers 1
David Sulzer
New York State Psychiatric Institute, Research Foundation for Mental Hygiene
Co-authored papers 1
Ernst J Wolvetang
Australian Institute for Bioengineering and Nanotechnology, University of Queensland
Co-authored papers 1
Ruedi Aebersold
Institute of Molecular Systems Biology, ETH Zurich
Co-authored papers 1
Manish K Aghi
University of California san francisco
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Release 1.2